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Report for CCDS26600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26600.1 Public Mus musculus 13 Ctsl 23 108 98 CCDS HistoryNCBI Gene:13039Re-query CCDS DB by CCDS ID:26600.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021933.7 ENSMUSP00000021933.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021933.7Link to Ensembl Protein Viewer:ENSMUSP00000021933.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021933Re-query CCDS DB by Protein ID:ENSMUSP00000021933
Original member Current member EBI ENSMUST00000222517.1 ENSMUSP00000152169.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222517.1Link to Ensembl Protein Viewer:ENSMUSP00000152169.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222517Re-query CCDS DB by Protein ID:ENSMUSP00000152169
Original member NCBI NM_009984.4 NP_034114.1 Updated not alive Link to Nucleotide Sequence:NM_009984.4Link to Protein Sequence:NP_034114.1Re-query CCDS DB by Nucleotide ID:NM_009984Re-query CCDS DB by Protein ID:NP_034114
Current member NCBI NM_009984.5 NP_034114.1 Accepted alive Link to Nucleotide Sequence:NM_009984.5Link to Protein Sequence:NP_034114.1Re-query CCDS DB by Nucleotide ID:NM_009984Re-query CCDS DB by Protein ID:NP_034114Link to BLAST:NP_034114.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034114.1 334 P06797 334 100% 0 0

Chromosomal Locations for CCDS 26600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 64364098 64364200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64365205 64365322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64366479 64366641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64366868 64367092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64367860 64368006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64368116 64368238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64369028 64369153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGAATCTTTTACTCCTTTTGGCTGTCCTCTGCTTGGGAACAGCCTTAGCTACTCCAAAATTTGATCAAA
CCTTTAGTGCAGAGTGGCACCAGTGGAAGTCCACACACAGAAGACTGTATGGCACGAATGAGGAAGAGTG
GAGGAGAGCGATATGGGAGAAGAACATGAGAATGATCCAGCTACACAACGGGGAATACAGCAACGGGCAG
CACGGCTTTTCCATGGAGATGAACGCCTTCGGTGACATGACCAATGAGGAATTCAGGCAGGTGGTGAATG
GCTACCGCCACCAGAAGCACAAGAAGGGGAGGCTTTTTCAGGAACCGCTGATGCTTAAGATCCCCAAGTC
TGTGGACTGGAGAGAAAAGGGTTGTGTGACTCCTGTGAAGAACCAGGGCCAGTGCGGGTCTTGTTGGGCG
TTTAGCGCATCGGGTTGCCTAGAAGGACAGATGTTCCTTAAGACCGGCAAACTGATCTCACTGAGTGAAC
AGAACCTTGTGGACTGTTCTCACGCTCAAGGCAATCAGGGCTGTAACGGAGGCCTGATGGATTTTGCTTT
CCAGTACATTAAGGAAAATGGAGGTCTGGACTCGGAGGAGTCTTACCCCTATGAAGCGAAGGACGGATCT
TGTAAATACAGAGCCGAGTTCGCTGTGGCTAATGACACAGGGTTCGTGGATATCCCTCAGCAAGAGAAAG
CCCTCATGAAGGCTGTGGCGACTGTGGGGCCTATTTCTGTTGCTATGGACGCAAGCCATCCGTCTCTCCA
GTTCTATAGTTCAGGCATCTACTATGAACCCAACTGTAGCAGCAAGAACCTCGACCATGGGGTTCTGTTG
GTGGGCTATGGCTATGAAGGAACAGATTCAAATAAGAATAAATATTGGCTTGTCAAGAACAGCTGGGGAA
GTGAATGGGGTATGGAAGGCTACATCAAAATAGCCAAAGACCGGGACAACCACTGTGGACTTGCCACCGC
GGCCAGCTATCCTGTCGTGAATTGA

Translation (334 aa):
MNLLLLLAVLCLGTALATPKFDQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLHNGEYSNGQ
HGFSMEMNAFGDMTNEEFRQVVNGYRHQKHKKGRLFQEPLMLKIPKSVDWREKGCVTPVKNQGQCGSCWA
FSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGS
CKYRAEFAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLL
VGYGYEGTDSNKNKYWLVKNSWGSEWGMEGYIKIAKDRDNHCGLATAASYPVVN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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