NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18102.1 Public Mus musculus 4 Creb3 23 108 98 CCDS HistoryNCBI Gene:12913Re-query CCDS DB by CCDS ID:18102.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102944.10 ENSMUSP00000100008.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102944.10Link to Ensembl Protein Viewer:ENSMUSP00000100008.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102944Re-query CCDS DB by Protein ID:ENSMUSP00000100008
Original member Current member NCBI NM_013497.4 NP_038525.2 Accepted alive Link to Nucleotide Sequence:NM_013497.4Link to Protein Sequence:NP_038525.2Re-query CCDS DB by Nucleotide ID:NM_013497Re-query CCDS DB by Protein ID:NP_038525Link to BLAST:NP_038525.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038525.2 379 Q61817-2 379 99.7361% 0 1

Chromosomal Locations for CCDS 18102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43562813 43562959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43563050 43563206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43563281 43563351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43563469 43563558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43565261 43565367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43565467 43565535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43566120 43566204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43566294 43566378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43566469 43566797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGATCCTGGTGGTCAGGATCTGCTAGCTTTGGATCCCGGTGATCAGGACCTGCTGGGCTTCCTGCTAG
AGGAAAGCGGAGATTTGTGGGCTGCGACTGAGCCGGACGTGAAGGCTCCGCTGGACTTAGAGCTGTCACC
TTCCGAGAACTCCGTGCAAGAACTGAGCGACTGGGAGGTAGAGGATTTACTGAGCTCTCTGCTCAGTCCC
TCAGTATCGCGGGATGTTCTCGGCTCTTCCAGCTCTTCCATTCTCCATGATCACAACTACTCCCTTCCAC
AGGAGCACGTCTCCATAGATCTAGATACTGAGAGCTTCGAAAAGGAGGGGTTCCACGTGACTCCACTGCC
AGGGGAGGAAAGAGCAGCGGAACAGGAGATGTCTAGGCTGATACTGACCGAGGAAGAGAAGAAGCTCTTG
GAGAAGGAGGGGCTCACTCTGCCCTCAACCCTTCCTCTCACTAAGGTGGAGGAACAAGTTCTGAAACGAG
TGCGGAGGAAGATTCGTAACAAGAGAGCAGCTCAAGAAAGCCGCAAGAAGAAGAAGGTGTATGTCGTGGG
GCTGGAGAGCAGGGTCTTGAAATACACAGCTCAGAATCGGGAGCTGCAGAACAAGGTGCAGCGTTTGGAG
GAACAGAATCTGTCCCTTCTAGATCAACTGAGGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAA
CCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTCTTCTCCTGGTACCCGCTATGTA
CTCCTCTGATGCAAGGGGAAGTGTGCCCGCGGAGTATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCCC
AGCGAGGACGATCATCAGCCGAAGCCATCTGCTCTATCGTCAGAGCTACCCATGGACAGCACACACCAGT
CACTGGACAGCTCAGAACATATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCA
GGCAGAGCAGCCCCTGCACTGGCCACTCTGGGATCTTTCTTCAGAGATGCTCTTCTCCGACTCCAACCTT
CTCCTGCAGGCAAACCTTTCAGAAAGCGAGGGATGGCAACCTAACCACAGCCCTTCTTTGGTCATCTTTC
AGGGCAGGTATTCAGGTTAG

Translation (379 aa):
MDPGGQDLLALDPGDQDLLGFLLEESGDLWAATEPDVKAPLDLELSPSENSVQELSDWEVEDLLSSLLSP
SVSRDVLGSSSSSILHDHNYSLPQEHVSIDLDTESFEKEGFHVTPLPGEERAAEQEMSRLILTEEEKKLL
EKEGLTLPSTLPLTKVEEQVLKRVRRKIRNKRAAQESRKKKKVYVVGLESRVLKYTAQNRELQNKVQRLE
EQNLSLLDQLRKLQAMVIEIANKTSSGSTCVLVLVFSFCLLLVPAMYSSDARGSVPAEYVVLHRKLRALP
SEDDHQPKPSALSSELPMDSTHQSLDSSEHMFLVSSNFSCVLYHAPQAEQPLHWPLWDLSSEMLFSDSNL
LLQANLSESEGWQPNHSPSLVIFQGRYSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH