NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52934.1 Public Mus musculus 9 Camp 23 108 98 CCDS HistoryNCBI Gene:12796Re-query CCDS DB by CCDS ID:52934.1See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 52934.1
Owing to stop SNP rs48466509 in the reference strain, the CCDS translation is one amino-acid shorter than in the FVB and BALB/C strains. The UniProt translation for this locus, P51437, is derived from a BALB/C mRNA and is 173 amino-acids long, versus 172 for the CCDS model.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 52934.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112022.4 ENSMUSP00000107653.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112022.4Link to Ensembl Protein Viewer:ENSMUSP00000107653.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112022Re-query CCDS DB by Protein ID:ENSMUSP00000107653
Original member Current member NCBI NM_009921.2 NP_034051.2 Accepted alive Link to Nucleotide Sequence:NM_009921.2Link to Protein Sequence:NP_034051.2Re-query CCDS DB by Nucleotide ID:NM_009921Re-query CCDS DB by Protein ID:NP_034051Link to BLAST:NP_034051.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034051.2 172 P51437 172 100% 0 0

Chromosomal Locations for CCDS 52934.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109847435 109847581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109848392 109848463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109848601 109848708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109849243 109849434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGCAGTTCCAGAGGGACGTCCCCTCCCTGTGGCTGTGGCGGTCACTATCACTGCTGCTGCTACTGGGCC
TGGGGTTCTCCCAGACCCCCAGCTACAGGGATGCTGTGCTCCGAGCTGTGGATGACTTCAACCAGCAGTC
CCTAGACACCAATCTCTACCGTCTCCTGGACCTGGATCCTGAGCCCCAAGGGGACGAGGATCCAGATACT
CCCAAGTCTGTGAGGTTCCGAGTGAAGGAGACTGTATGTGGCAAGGCAGAGCGGCAGCTACCTGAGCAAT
GTGCCTTCAAGGAACAGGGGGTGGTGAAGCAGTGTATGGGGGCAGTCACCCTGAACCCGGCCGCTGATTC
TTTTGACATCAGCTGTAACGAGCCTGGTGCACAGCCCTTTCGGTTCAAGAAAATTTCCCGGCTGGCTGGA
CTTCTCCGCAAAGGTGGGGAGAAGATTGGTGAAAAGCTTAAGAAAATTGGCCAGAAAATTAAGAATTTTT
TTCAGAAACTTGTACCTCAGCCAGAGTAG

Translation (172 aa):
MQFQRDVPSLWLWRSLSLLLLLGLGFSQTPSYRDAVLRAVDDFNQQSLDTNLYRLLDLDPEPQGDEDPDT
PKSVRFRVKETVCGKAERQLPEQCAFKEQGVVKQCMGAVTLNPAADSFDISCNEPGAQPFRFKKISRLAG
LLRKGGEKIGEKLKKIGQKIKNFFQKLVPQPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH