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Report for CCDS29451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29451.1 Public Mus musculus 19 Cnih2 23 108 98 CCDS HistoryNCBI Gene:12794Re-query CCDS DB by CCDS ID:29451.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025805.7 ENSMUSP00000025805.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025805.7Link to Ensembl Protein Viewer:ENSMUSP00000025805.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025805Re-query CCDS DB by Protein ID:ENSMUSP00000025805
Original member Current member NCBI NM_009920.4 NP_034050.1 Accepted alive Link to Nucleotide Sequence:NM_009920.4Link to Protein Sequence:NP_034050.1Re-query CCDS DB by Nucleotide ID:NM_009920Re-query CCDS DB by Protein ID:NP_034050Link to BLAST:NP_034050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034050.1 160 O35089 160 100% 0 0

Chromosomal Locations for CCDS 29451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5093470 5093497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5093672 5093815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5093920 5094032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5094284 5094331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5094732 5094800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5098183 5098263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGCGTTCACCTTCGCAGCATTCTGCTACATGCTCACCCTGGTGCTGTGCGCCTCCCTCATCTTCTTTG
TCATCTGGCACATCATAGCCTTTGATGAGCTGCGGACTGACTTCAAGAACCCCATCGACCAGGGGAACCC
AGCGCGGGCACGCGAGCGTTTGAAAAACATCGAACGCATCTGCTGCCTCCTGAGGAAGCTGGTGGTCCCG
GAATATTCCATCCACGGCCTCTTCTGTCTGATGTTTCTGTGTGCAGCAGAGTGGGTGACCCTGGGCCTCA
ACATCCCCCTCCTCTTCTACCACCTCTGGAGGTACTTCCACCGTCCTGCGGATGGCTCTGAGGTCATGTA
TGATGCGGTCTCTATCATGAATGCTGACATCCTCAACTACTGCCAGAAGGAGTCCTGGTGCAAACTCGCC
TTCTACCTGCTGTCCTTCTTCTATTACCTGTACAGTATGGTTTATACGTTGGTGAGCTTCTAA

Translation (160 aa):
MAFTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVVP
EYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSIMNADILNYCQKESWCKLA
FYLLSFFYYLYSMVYTLVSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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