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Report for CCDS19930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19930.1 Public Mus musculus 6 Cftr 23 108 98 CCDS HistoryNCBI Gene:12638Re-query CCDS DB by CCDS ID:19930.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19930.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045706.11 ENSMUSP00000049228.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045706.11Link to Ensembl Protein Viewer:ENSMUSP00000049228.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045706Re-query CCDS DB by Protein ID:ENSMUSP00000049228
Original member Current member NCBI NM_021050.2 NP_066388.1 Accepted alive Link to Nucleotide Sequence:NM_021050.2Link to Protein Sequence:NP_066388.1Re-query CCDS DB by Nucleotide ID:NM_021050Re-query CCDS DB by Protein ID:NP_066388Link to BLAST:NP_066388.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066388.1 1476 P26361-1 1476 100% 0 0

Chromosomal Locations for CCDS 19930.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 18170824 18170876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18198122 18198232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18204172 18204280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18214100 18214315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18220621 18220710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18221470 18221633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18222490 18222615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18225924 18226170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18227927 18228019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18229977 18230159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18235156 18235347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18255380 18255474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18258231 18258317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18267720 18268428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18270198 18270326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18273699 18273736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18274527 18274777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18277808 18277887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18280256 18280406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18282427 18282654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18285547 18285647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18299683 18299934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18305832 18305987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18313640 18313729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18318914 18319086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18319676 18319781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18320833 18321033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4431 nt):
ATGCAGAAGTCGCCTTTGGAGAAAGCCAGCTTTATCTCCAAACTCTTCTTCAGCTGGACCACACCAATTT
TGAGGAAAGGGTACAGACACCACTTGGAGTTGTCAGACATATACCAAGCCCCTTCTGCTGATTCAGCTGA
CCACTTGTCTGAAAAACTAGAAAGAGAATGGGACAGAGAACAAGCTTCAAAAAAGAATCCCCAGCTTATC
CACGCCCTTCGGCGATGCTTTTTCTGGAGATTCCTCTTCTATGGAATTTTGCTATACCTAGGGGAAGTCA
CCAAGGCTGTCCAGCCTGTCTTGCTAGGAAGAATCATAGCATCCTATGATCCAGAAAACAAGGTGGAACG
TTCCATTGCCATTTACCTTGGCATAGGCTTATGCCTTCTCTTCATTGTCAGGACACTGCTTCTTCACCCA
GCTATTTTTGGCCTTCATCGCATTGGAATGCAGATGAGAACAGCTATGTTTAGCTTGATTTATAAGAAGA
CTTTAAAGTTGTCAAGCCGCGTTCTTGATAAAATAAGTATTGGACAACTTGTTAGTCTTCTTTCCAACAA
CCTGAACAAATTTGATGAAGGACTTGCCTTGGCACATTTTATATGGATTGCTCCTTTACAAGTGACTCTT
CTGATGGGGCTTCTCTGGGACTTGTTACAGTTCTCAGCCTTCTGTGGCCTTGGTTTACTGATAATCCTGG
TTATTTTTCAAGCTATCCTAGGGAAGATGATGGTGAAGTACAGAGATCAGAGAGCTGCAAAGATCAATGA
AAGACTCGTGATCACATCAGAAATTATTGATAATATCTATTCTGTTAAGGCATATTGTTGGGAATCAGCG
ATGGAGAAAATGATTGAAAACTTGAGAGAGGTGGAGCTGAAAATGACCCGGAAGGCGGCCTATATGAGGT
TCTTCACTAGCTCTGCCTTCTTCTTTTCAGGGTTCTTTGTAGTCTTTCTATCTGTGCTTCCCTACACAGT
CATCAACGGAATCGTCCTACGAAAAATATTCACAACCATTTCATTCTGCATTGTCCTACGTATGTCAGTC
ACACGGCAGTTCCCCACTGCCGTACAGATATGGTATGATTCTTTTGGAATGATAAGAAAAATACAGGATT
TCCTGCAGAAACAAGAGTATAAAGTACTGGAGTATAACTTAATGACCACAGGCATAATCATGGAAAATGT
AACAGCATTTTGGGAGGAGGGATTTGGGGAATTACTGGAGAAAGTACAACAAAGCAATGGTGACAGAAAA
CATTCCAGTGATGAGAACAATGTCAGTTTCAGTCATCTCTGCCTTGTGGGAAATCCTGTGCTGAAAAACA
TCAATTTGAATATAGAGAAAGGAGAGATGTTGGCTATTACTGGATCTACTGGATCAGGAAAGACATCACT
CCTGATGTTGATTTTGGGAGAACTGGAAGCTTCAGAGGGAATTATTAAGCACAGTGGAAGAGTTTCATTC
TGCTCTCAATTTTCTTGGATTATGCCGGGTACTATCAAAGAAAATATCATCTTTGGTGTTTCCTATGATG
AGTACAGATATAAGAGTGTTGTCAAAGCTTGCCAACTACAGCAGGACATCACCAAGTTTGCAGAACAAGA
CAACACAGTTCTTGGAGAAGGTGGAGTCACACTGAGTGGAGGTCAGCGTGCAAGGATTTCTTTAGCAAGA
GCAGTATATAAAGATGCTGATTTGTACCTATTAGATTCCCCTTTTGGATATCTAGATGTTTTTACTGAAG
AACAAGTATTTGAAAGCTGTGTTTGTAAATTGATGGCCAACAAAACTAGGATTTTGGTTACATCTAAAAT
GGAACACTTAAGGAAAGCTGACAAAATACTAATTTTGCATCAGGGCAGTAGCTATTTTTATGGGACATTT
TCTGAGCTACAAAGTCTACGTCCAGACTTCAGTTCGAAACTCATGGGGTATGATACTTTTGACCAGTTTA
CTGAGGAAAGAAGAAGTTCAATTCTAACTGAGACCTTACGCAGGTTCTCAGTAGACGATTCCTCTGCCCC
GTGGAGCAAACCCAAACAGTCGTTTAGACAGACTGGAGAGGTGGGAGAAAAAAGGAAGAACTCTATTCTA
AATTCATTCAGCTCTGTAAGGAAAATTTCCATTGTGCAAAAGACTCCATTATGTATCGATGGAGAGTCTG
ATGATCTCCAAGAAAAGAGACTGTCCCTAGTTCCGGATTCTGAACAGGGGGAGGCTGCTCTGCCGCGCAG
CAACATGATCGCCACCGGCCCCACATTTCCAGGCAGAAGAAGACAGTCTGTTTTGGATCTGATGACGTTC
ACACCCAACTCAGGCTCCAGCAATCTTCAGAGGACCAGAACTTCTATTCGAAAAATCTCCTTAGTCCCTC
AGATAAGCTTAAATGAAGTGGATGTATATTCAAGGAGATTATCGCAAGATAGCACACTGAACATCACTGA
AGAAATTAACGAAGAAGATTTAAAGGAGTGTTTTCTTGATGATGTGATCAAGATACCCCCGGTGACAACA
TGGAACACATACCTACGATATTTTACTCTCCATAAAGGCTTACTGCTAGTGCTGATTTGGTGCGTACTGG
TTTTTCTGGTTGAGGTGGCTGCTTCTTTATTTGTGTTATGGTTGCTTAAAAACAACCCTGTTAACAGTGG
AAACAATGGTACTAAAATTTCCAATAGCTCCTATGTTGTGATCATCACCAGTACCAGTTTCTATTATATT
TTTTACATTTACGTGGGAGTGGCTGACACTTTGCTTGCCCTGAGCCTCTTCAGAGGTTTGCCGCTGGTGC
ATACGTTAATCACAGCATCAAAAATTTTGCACAGGAAAATGTTACACTCCATTCTTCACGCCCCTATGTC
GACCATCAGCAAGCTGAAAGCAGGTGGGATTCTTAACAGATTCTCCAAAGATATAGCAATTTTGGATGAC
TTTCTGCCTCTTACCATTTTTGACTTCATTCAGTTGGTGTTCATTGTGATTGGAGCTATAATAGTCGTCT
CGGCATTACAACCCTACATCTTCCTAGCAACGGTGCCAGGGCTAGTAGTCTTTATTTTACTGAGGGCCTA
CTTCCTTCATACAGCACAGCAGCTCAAACAACTGGAATCTGAAGGCAGGAGTCCAATTTTCACCCACCTT
GTGACAAGCTTAAAAGGACTCTGGACACTTCGAGCCTTCCGACGCCAGACTTACTTTGAAACTCTGTTCC
ACAAAGCTCTGAATTTGCACACTGCCAACTGGTTTATGTATCTGGCAACCTTGCGCTGGTTCCAAATGAG
AATAGACATGATATTTGTCCTCTTCTTCATTGTTGTTACCTTCATCTCCATTTTAACAACAGGTGAAGGA
GAAGGAACAGCTGGTATTATTCTAACTTTAGCTATGAATATCATGAGTACTTTGCAGTGGGCTGTGAACT
CAAGCATTGATACAGATAGCTTGATGCGATCTGTGAGCAGAGTGTTTAAGTTTATTGATATACAAACAGA
AGAAAGTATGTACACACAGATAATTAAAGAACTACCTAGAGAAGGATCATCTGACGTTTTAGTCATTAAG
AATGAGCATGTGAAGAAAAGTGATATCTGGCCCTCTGGAGGCGAAATGGTTGTCAAAGACCTTACTGTGA
AATACATGGATGATGGAAATGCCGTATTAGAGAACATTTCTTTTTCAATAAGTCCTGGACAGAGGGTGGG
GCTCTTAGGAAGAACTGGATCAGGAAAAAGTACTTTGCTTTCAGCATTTTTACGAATGTTGAACATTAAA
GGTGATATAGAGATTGATGGTGTCTCATGGAATTCAGTGACCTTACAAGAATGGAGGAAAGCTTTCGGAG
TGATAACACAGAAAGTATTTATCTTTTCTGGAACATTCAGACAAAACCTGGATCCCAATGGAAAATGGAA
AGATGAAGAAATATGGAAAGTTGCAGATGAGGTTGGACTCAAGTCTGTAATAGAGCAGTTTCCTGGACAG
CTCAACTTTACCCTTGTGGATGGGGGTTATGTGCTAAGCCATGGCCATAAGCAATTAATGTGCTTGGCCC
GATCAGTTCTCAGTAAGGCCAAGATCATACTGCTTGATGAGCCCAGTGCCCATCTAGACCCCATAACATA
CCAAGTCATTCGACGAGTTCTAAAACAAGCCTTCGCTGGTTGCACAGTCATCCTCTGTGAACACAGGATA
GAAGCGATGTTGGATTGCCAGCGATTTTTGGTCATAGAAGAGAGCAATGTCTGGCAGTACGACTCCCTTC
AGGCACTTCTGAGTGAGAAGAGTATCTTCCAGCAGGCCATTAGCTCCTCGGAAAAGATGAGGTTCTTCCA
GGGCCGCCACTCCAGCAAGCACAAGCCTCGGACGCAAATTACTGCTCTGAAAGAGGAGACAGAAGAAGAA
GTTCAAGAAACCCGTCTCTAG

Translation (1476 aa):
MQKSPLEKASFISKLFFSWTTPILRKGYRHHLELSDIYQAPSADSADHLSEKLEREWDREQASKKNPQLI
HALRRCFFWRFLFYGILLYLGEVTKAVQPVLLGRIIASYDPENKVERSIAIYLGIGLCLLFIVRTLLLHP
AIFGLHRIGMQMRTAMFSLIYKKTLKLSSRVLDKISIGQLVSLLSNNLNKFDEGLALAHFIWIAPLQVTL
LMGLLWDLLQFSAFCGLGLLIILVIFQAILGKMMVKYRDQRAAKINERLVITSEIIDNIYSVKAYCWESA
MEKMIENLREVELKMTRKAAYMRFFTSSAFFFSGFFVVFLSVLPYTVINGIVLRKIFTTISFCIVLRMSV
TRQFPTAVQIWYDSFGMIRKIQDFLQKQEYKVLEYNLMTTGIIMENVTAFWEEGFGELLEKVQQSNGDRK
HSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF
CSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLAR
AVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTF
SELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRRFSVDDSSAPWSKPKQSFRQTGEVGEKRKNSIL
NSFSSVRKISIVQKTPLCIDGESDDLQEKRLSLVPDSEQGEAALPRSNMIATGPTFPGRRRQSVLDLMTF
TPNSGSSNLQRTRTSIRKISLVPQISLNEVDVYSRRLSQDSTLNITEEINEEDLKECFLDDVIKIPPVTT
WNTYLRYFTLHKGLLLVLIWCVLVFLVEVAASLFVLWLLKNNPVNSGNNGTKISNSSYVVIITSTSFYYI
FYIYVGVADTLLALSLFRGLPLVHTLITASKILHRKMLHSILHAPMSTISKLKAGGILNRFSKDIAILDD
FLPLTIFDFIQLVFIVIGAIIVVSALQPYIFLATVPGLVVFILLRAYFLHTAQQLKQLESEGRSPIFTHL
VTSLKGLWTLRAFRRQTYFETLFHKALNLHTANWFMYLATLRWFQMRIDMIFVLFFIVVTFISILTTGEG
EGTAGIILTLAMNIMSTLQWAVNSSIDTDSLMRSVSRVFKFIDIQTEESMYTQIIKELPREGSSDVLVIK
NEHVKKSDIWPSGGEMVVKDLTVKYMDDGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRMLNIK
GDIEIDGVSWNSVTLQEWRKAFGVITQKVFIFSGTFRQNLDPNGKWKDEEIWKVADEVGLKSVIEQFPGQ
LNFTLVDGGYVLSHGHKQLMCLARSVLSKAKIILLDEPSAHLDPITYQVIRRVLKQAFAGCTVILCEHRI
EAMLDCQRFLVIEESNVWQYDSLQALLSEKSIFQQAISSSEKMRFFQGRHSSKHKPRTQITALKEETEEE
VQETRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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