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Report for CCDS15841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15841.1 Public Mus musculus 2 Cel 23 108 98 CCDS HistoryNCBI Gene:12613Re-query CCDS DB by CCDS ID:15841.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15841.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028161.5 ENSMUSP00000028161.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028161.5Link to Ensembl Protein Viewer:ENSMUSP00000028161.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028161Re-query CCDS DB by Protein ID:ENSMUSP00000028161
Original member Current member NCBI NM_009885.2 NP_034015.1 Accepted alive Link to Nucleotide Sequence:NM_009885.2Link to Protein Sequence:NP_034015.1Re-query CCDS DB by Nucleotide ID:NM_009885Re-query CCDS DB by Protein ID:NP_034015Link to BLAST:NP_034015.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034015.1 599 Q64285 599 100% 0 0

Chromosomal Locations for CCDS 15841.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28556058 28556373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28556674 28556871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28557615 28557818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28557931 28558117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28559319 28559436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28559574 28559681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28559826 28559956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28560474 28560671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28560910 28561032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28561127 28561277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28563297 28563362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGGGGCGCCTGGAGGTTCTATTTCTTGGCCTCACCTGCTGCTTGGCAGCGGCTTGTGCTGCAAAGTTGG
GGGCTGTGTACACAGAAGGCGGTTTCGTGGAGGGCGTCAACAAGAAGCTCAGTCTCTTGGGTGGTGACTC
TGTTGACATCTTCAAGGGCATCCCCTTTGCCACTGCCAAGACCTTGGAGAATCCTCAGCGTCACCCTGGC
TGGCAAGGGACGCTGAAGGCTACAAACTTCAAGAAACGATGCCTACAGGCCACCATCACCCAGGACAACA
CCTATGGGCAAGAAGACTGCCTCTACCTCAATATCTGGGTGCCCCAGGGCAGGAAGCAGGTGTCCCACAA
CCTGCCTGTGATGGTCTGGATCTATGGAGGTGCCTTCCTCATGGGATCTGGCCAAGGGGCCAATTTTCTC
AAAAACTACCTGTATGACGGGGAGGAGATCGCCACTCGGGGCAACGTCATTGTGGTCACCTTCAACTACC
GTGTTGGACCCTTGGGTTTCCTTAGCACCGGGGATGCTAACCTTCCAGGTAACTTTGGTCTTCGAGATCA
GCACATGGCTATCGCCTGGGTGAAGAGGAACATTGCAGCCTTTGGGGGGGACCCTGATAACATCACCATC
TTTGGGGAATCTGCTGGAGCTGCCAGTGTCTCCCTGCAGACCCTCTCCCCATACAACAAGGGTCTCATCC
GGAGAGCCATCAGTCAGAGTGGTATGGCACTGAGCCCCTGGGCCATCCAGAAGAACCCACTTTTCTGGGC
CAAAACGATTGCTAAGAAGGTAGGATGCCCCACAGAGGATACTGGCAAGATGGCTGCGTGTCTGAAGATC
ACAGATCCCCGGGCCTTGACACTGGCCTACAAGTTGCCCGTGAAAAAGCAGGAGTACCCTGTTGTGCACT
ACCTGGCCTTCATCCCTGTCATCGATGGTGACTTCATTCCCGATGATCCCATCAACCTGTACAACAACAC
TGCTGACATTGACTACATAGCGGGCATTAACAACATGGACGGCCACCTATTTGCTACCATTGATGTGCCC
GCTGTCGACAAGACCAAGCAGACTGTCACCGAGGAGGACTTCTACAGGCTAGTCAGTGGACACACTGTCG
CCAAGGGGCTGAAGGGGGCCCAAGCCACCTTTGACATCTACACTGAGTCCTGGGCCCAGGACCCGTCCCA
GGAGAACATGAAGAAGACAGTGGTGGCCTTTGAGACTGATGTACTCTTCCTGATCCCCACGGAGATAGCG
CTGGCCCAGCACAAAGCCCATGCCAAGAGCGCCAAGACCTATTCTTACCTGTTTTCCCACCCTTCACGGA
TGCCTATCTACCCCAAATGGATGGGGGCAGACCATGCTGATGACCTCCAGTACGTCTTTGGAAAGCCTTT
TGCCACCCCACTGGGCTACCGGCCCCAAGATAGGGCTGTCTCCAAGGCCATGATCGCCTATTGGACCAAC
TTTGCCAGGAGTGGGGACCCCAACATGGGCAACTCACCTGTGCCCACACACTGGTACCCTTATACCTTGG
AGAATGGCAACTACCTGGACATCACTAAGACGATAACCAGCGCTTCCATGAAGGAGCACCTGAGAGAAAA
GTTCCTGAAGTTCTGGGCTGTGACATTCGAGGTGCTGCCCACAGTGACTGGTGACCAGGACACCCTCACT
CCCCCTGAGGATGACTCAGAGGTTGCCCCTGACCCACCTTCAGACGACTCCCAGGTTGTTCCTGTCCCAC
CTACAGATGACTCTGTGGAGGCTCAGATGCCTGCCACCATTGGCTTCTAA

Translation (599 aa):
MGRLEVLFLGLTCCLAAACAAKLGAVYTEGGFVEGVNKKLSLLGGDSVDIFKGIPFATAKTLENPQRHPG
WQGTLKATNFKKRCLQATITQDNTYGQEDCLYLNIWVPQGRKQVSHNLPVMVWIYGGAFLMGSGQGANFL
KNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDANLPGNFGLRDQHMAIAWVKRNIAAFGGDPDNITI
FGESAGAASVSLQTLSPYNKGLIRRAISQSGMALSPWAIQKNPLFWAKTIAKKVGCPTEDTGKMAACLKI
TDPRALTLAYKLPVKKQEYPVVHYLAFIPVIDGDFIPDDPINLYNNTADIDYIAGINNMDGHLFATIDVP
AVDKTKQTVTEEDFYRLVSGHTVAKGLKGAQATFDIYTESWAQDPSQENMKKTVVAFETDVLFLIPTEIA
LAQHKAHAKSAKTYSYLFSHPSRMPIYPKWMGADHADDLQYVFGKPFATPLGYRPQDRAVSKAMIAYWTN
FARSGDPNMGNSPVPTHWYPYTLENGNYLDITKTITSASMKEHLREKFLKFWAVTFEVLPTVTGDQDTLT
PPEDDSEVAPDPPSDDSQVVPVPPTDDSVEAQMPATIGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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