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Report for CCDS20295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20295.1 Public Mus musculus 6 Cct7 23 108 98 CCDS HistoryNCBI Gene:12468Re-query CCDS DB by CCDS ID:20295.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032078.8 ENSMUSP00000032078.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032078.8Link to Ensembl Protein Viewer:ENSMUSP00000032078.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032078Re-query CCDS DB by Protein ID:ENSMUSP00000032078
Original member Current member NCBI NM_007638.4 NP_031664.3 Accepted alive Link to Nucleotide Sequence:NM_007638.4Link to Protein Sequence:NP_031664.3Re-query CCDS DB by Nucleotide ID:NM_007638Re-query CCDS DB by Protein ID:NP_031664Link to BLAST:NP_031664.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031664.3 544 P80313 544 100% 0 0

Chromosomal Locations for CCDS 20295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85452122 85452127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85459115 85459268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85459942 85460048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85461045 85461170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85461508 85461560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85462026 85462197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85464780 85464944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85465900 85466088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85466624 85466721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85467027 85467159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85467579 85467785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85468053 85468277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGATGCCCACACCAGTTATCCTGTTGAAAGAGGGTACTGATAGCTCCCAGGGCATCCCTCAGCTCGTGA
GTAACATCAGTGCCTGCCAAGTGATTGCTGAGGCTGTAAGAACCACCCTGGGTCCCCGTGGCATGGACAA
ACTTATTGTGGATGGCCGAGGCAAAGCAACAATATCTAATGATGGGGCCACAATTCTGAAACTCCTCGAT
GTTGTCCATCCTGCAGCAAAGACTTTAGTGGACATAGCCAAGTCCCAGGATGCTGAGGTTGGTGATGGCA
CCACCTCAGTGACCCTGCTGGCTGCGGAGTTTCTGAAGCAGGTGAAGCCCTACGTGGAAGAAGGTTTACA
CCCTCAGATCATCATCCGAGCTTTCCGCACAGCCACCCAATTGGCTGTTAACAAAATCAAAGAGATAGCT
GTGACTGTGAAGAAGCAAGATAAAGTAGAGCAGAGGAAGATGCTGGAGAAGTGTGCGATGACAGCCCTGA
GCTCCAAGCTGATCTCCCAGCAGAAGGTCTTCTTCGCCAAGATGGTGGTTGATGCCGTGATGATGCTTGA
CGAGCTGCTGCAGCTTAAAATGATTGGCATCAAGAAGGTGCAGGGGGGAGCCCTGGAGGAGTCTCAGCTA
GTTGCTGGTGTTGCGTTCAAGAAGACTTTCTCTTATGCTGGGTTTGAAATGCAGCCCAAGAAGTATAAGA
ACCCCAAGATTGCCCTCTTAAATGTTGAGCTTGAGCTGAAAGCAGAGAAAGATAATGCTGAAATCAGAGT
CCACACAGTGGAGGATTACCAGGCAATTGTTGATGCCGAGTGGAATATTCTCTATGACAAGTTAGAGAAG
ATCCATCAGTCTGGAGCCAAAGTCATCTTGTCTAAACTCCCTATTGGGGATGTGGCCACCCAGTACTTTG
CTGATAGGGACATGTTCTGTGCTGGCCGAGTGCCTGAGGAGGATCTGAAGAGGACGATGATGGCTTGTGG
AGGCTCAATCCAGACCAGTGTGAATGCTCTGGTTCCAGATGTGCTGGGCCACTGCCAAGTGTTTGAAGAG
ACCCAAATTGGAGGAGAGAGGTACAATTTCTTCACTGGCTGCCCTAAGGCCAAGACATGTACCATCATCC
TCCGTGGTGGCGCTGAGCAGTTTATGGAAGAGACAGAGAGGTCCCTACATGATGCCATCATGATTGTGAG
GAGGGCCATCAAGAATGACTCTGTGGTGGCTGGTGGTGGAGCCATCGAGATGGAACTTTCCAAATACCTG
CGGGATTACTCGAGGACCATTCCTGGGAAGCAGCAGCTGTTGATTGGGGCATATGCCAAGGCCCTGGAGA
TTATTCCACGACAGCTATGTGACAACGCTGGCTTTGATGCCACAAACATCCTCAACAAGCTGCGGGCTCG
ACACGCACAGGGAGGTATGTGGTATGGGGTGGACATCAACAATGAGAACATCGCCGACAACTTCCAGGCA
TTTGTGTGGGAGCCAGCCATGGTGCGCATCAACGCTCTGACAGCAGCTTCTGAGGCTGCATGCCTTATTG
TGTCCGTGGATGAGACTATCAAGAACCCCCGCTCCACTGTGGATCCTCCAGCTCCATCAGCTGGCCGTGG
CAGAGGCCAAGCCCGCTTCCACTGA

Translation (544 aa):
MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLD
VVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIA
VTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMMLDELLQLKMIGIKKVQGGALEESQL
VAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEK
IHQSGAKVILSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALVPDVLGHCQVFEE
TQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL
RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINNENIADNFQA
FVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDPPAPSAGRGRGQARFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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