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Report for CCDS36067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36067.1 Public Mus musculus 10 Cct2 23 108 98 CCDS HistoryNCBI Gene:12461Re-query CCDS DB by CCDS ID:36067.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047672.8 ENSMUSP00000036288.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047672.8Link to Ensembl Protein Viewer:ENSMUSP00000036288.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047672Re-query CCDS DB by Protein ID:ENSMUSP00000036288
Original member Current member NCBI NM_007636.3 NP_031662.2 Accepted alive Link to Nucleotide Sequence:NM_007636.3Link to Protein Sequence:NP_031662.2Re-query CCDS DB by Nucleotide ID:NM_007636Re-query CCDS DB by Protein ID:NP_031662Link to BLAST:NP_031662.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031662.2 535 P80314 535 100% 0 0

Chromosomal Locations for CCDS 36067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 117051246 117051276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117053016 117053157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117054040 117054139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117054877 117054980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117055107 117055235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117056040 117056159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117057174 117057277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117057791 117057918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117058098 117058198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117060648 117060850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117061298 117061410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117061505 117061581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117062025 117062136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117062817 117062882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117062976 117063050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117063706 117063708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGCTTCCCTTTCCCTCGCACCTGTTAATATCTTCAAGGCTGGAGCTGATGAAGAGAGGGCCGAGACAG
CTCGCCTGTCGTCGTTTATCGGTGCCATCGCCATTGGAGACTTGGTGAAGAGCACTTTGGGACCGAAGGG
CATGGACAAAATTCTCCTAAGCAGTGGACGAGACGCCGCTCTGATGGTGACCAACGACGGTGCTACCATT
CTCAAGAACATTGGTGTGGACAACCCCGCAGCAAAGGTTCTAGTTGATATGTCAAGGGTTCAAGATGATG
AAGTTGGTGATGGCACTACCTCTGTTACTGTCTTAGCCGCAGAGCTGCTCCGGGAAGCAGAATCTTTAAT
TGCAAAAAAGATACATCCACAGACCATCATCTCAGGTTGGAGAGAAGCCACAAAGGCAGCAAGAGAGGCC
CTGCTGAGCTCCGCTGTGGATCATGGTTCTGATGAAGCCAGATTCTGGCAGGACTTAATGAACATTGCAG
GAACGACATTGTCCTCAAAGCTCCTTACTCACCACAAGGACCACTTTACTAAACTGGCCGTGGAAGCGGT
TCTCAGACTGAAAGGCTCTGGCAACCTGGAGGCGATTCATGTCATCAAGAAACTAGGTGGGAGTCTGGCA
GACTCCTATCTAGATGAAGGTTTTCTTTTGGATAAAAAAATTGGAGTAAATCAACCAAAGAGAATTGAAA
ATGCTAAAATTCTTATTGCAAATACTGGGATGGATACAGACAAAATAAAGATATTTGGCTCTCGGGTAAG
AGTTGATTCCACAGCAAAGGTTGCAGAGATAGAACATGCAGAAAAGGAGAAGATGAAGGAGAAAGTTGAA
CGTATTCTTAAGCATGGAATAAATTGCTTTATTAACAGACAGTTAATTTATAATTACCCTGAACAACTCT
TCGGCGCTGCTGGCGTCATGGCTATTGAGCATGCGGATTTCGCAGGTGTGGAGCGCCTCGCTCTTGTCAC
AGGTGGTGAGATTGCCTCTACCTTTGATCACCCAGAACTTGTGAAGCTTGGAAGTTGCAAACTTATTGAA
GAAGTTATGATCGGGGAAGATAAACTCATTCACTTTTCTGGGGTTGCCCTTGGTGAGGCATGCACCATTG
TGCTTCGTGGTGCCACTCAGCAAATTCTGGATGAAGCTGAACGATCTCTGCATGATGCTCTTTGTGTTCT
TGCTCAGACTGTAAAAGATCCTAGAACAGTTTACGGGGGAGGCTGCTCTGAGATGCTGATGGCCCATGCT
GTGACACAGCTTGCCAACAGAACCCCAGGAAAAGAAGCTGTAGCAATGGAGTCGTTTGCAAAAGCCCTGA
GAATGTTGCCGACCATCATAGCCGACAATGCGGGCTATGACAGTGCAGATCTGGTGGCACAGCTCCGAGC
TGCTCACAGTGAAGGCCATATAACTGCTGGACTGGATATGAAGGAAGGTACCATCGGCGATATGGCAGTA
CTGGGTATAACAGAGAGTTTTCAAGTGAAGCGACAGGTTCTTCTGAGTGCGGCTGAAGCAGCAGAGGTGA
TCCTGCGAGTGGACAACATTATCAAAGCAGCACCAAGGAAACGTGTCCCCGATCACCACCCCTGTTAA

Translation (535 aa):
MASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATI
LKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREA
LLSSAVDHGSDEARFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLA
DSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVE
RILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIE
EVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHA
VTQLANRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGHITAGLDMKEGTIGDMAV
LGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVPDHHPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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