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Report for CCDS25708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25708.1 Public Mus musculus 11 Cbx2 23 108 98 CCDS HistoryNCBI Gene:12416Re-query CCDS DB by CCDS ID:25708.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25708.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026662.7 ENSMUSP00000026662.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026662.7Link to Ensembl Protein Viewer:ENSMUSP00000026662.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026662Re-query CCDS DB by Protein ID:ENSMUSP00000026662
Original member Current member NCBI NM_007623.3 NP_031649.2 Accepted alive Link to Nucleotide Sequence:NM_007623.3Link to Protein Sequence:NP_031649.2Re-query CCDS DB by Nucleotide ID:NM_007623Re-query CCDS DB by Protein ID:NP_031649Link to BLAST:NP_031649.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031649.2 519 P30658 519 100% 0 0

Chromosomal Locations for CCDS 25708.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119023109 119023180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119023258 119023301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119024175 119024240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119026450 119026555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119027899 119029170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGAGGAGCTGAGCAGCGTGGGCGAGCAGGTCTTCGCCGCCGAGTGCATCCTGAGCAAGCGGCTCCGCA
AGGGCAAGCTGGAGTACCTGGTCAAGTGGCGCGGCTGGTCCTCCAAACACAACAGCTGGGAGCCAGAAGA
GAACATTTTGGACCCGAGGCTGCTCCTAGCCTTCCAGAAGAAGGAACATGAGAAGGAGGTTCAGAACCGG
AAGAGAGGCAAGAGACCCAGGGGCAGGCCGAGGAAACACACAGTCACATCCTCCTGCAGCCGGCGCTCCA
AGCTCAAGGAACCAGATGCGCCATCCAAATCCAAATCCAGCAGTTCGTCCTCTTCCTCCACATCTTCCTC
CTCTTCCTCGGACGAAGAGGAAGACGACAGCGACCTAGACTCCAAGAGAGGCCCCCGGGGCCGTGAAACC
CATCCAGTGCCTCAGAAAAAAGCCCAGATCCTGGTAGCCAAGCCAGAGCTGAAGGATCCCATTAGAAAGA
AACGGGGACGCAAGCCTCTACCCCCAGAACAGAAGGCAGCTCGGAGACCCGTCAGCCTGGCCAAGGTGCT
AAAGACCACCAGGAAGGATCTGGGGACCTCAGCCGCCAAGCTGCCCCCTCCACTCAGCGCTCCGGTGGCA
GGCCTGGCTGCCCTGAAGGCCCACACCAAAGAGGCCTGTGGTGGCCCCAGCACTATGGCGACCCCAGAGA
ACCTGGCCAGTCTGATGAAAGGCATGGCCGGGAGCCCCAGCAGAGGCGGCATCTGGCAGAGCTCCATCGT
ACACTACATGAACCGCATGAGCCAGAGTCAGGTTCAGGCTGCCAGCCGACTGGCACTCAAGGCCCAGGCC
ACCAACAAGTGCGGTCTCGGGCTAGACCTGAAAGTGAGGACGCAGAAGGGGGGTGAGCTAGGGGGGAGCC
CCGCAGGAGGCAAGGTCCCGAAGGCCCCCGGTGGCGGAGCTGCAGAGCAGCAGAGAGGGAACCATTCGGG
GAGCCCAGGTGCTCAGCTGGCACCCACTCAGGAGTTGAGCCTTCAGGTCCTTGACTTGCAAAGCGTCAAG
AACGGTGTGCCTGGTGTGGGCCTGCTTGCTCGCCATGCCCCAGCCAAGGCTATTCCTGCTACCAACCCAG
CCACAGGGAAAGGTCCTGGGAGCGGCCCCACAGGAGCAAACATGACCAACGCTCCCACAGACAACAACAA
AGGGGAAAAGCTGACTTGCAAGGCAACGGCTCTGCCTGCCCCTTCCGTCAAGCGGGACACCGTTAAAAGC
GTCGCTGCCTCCGGCGGGCAGGAGGGCCACACAGCCCCGGGAGAAGGCCGAAAGCCACCTGCGCTGTCTG
AGCTGAGCACGGGAGAGGAGAATAGTAGCTCTGACTCGGACCCTGACTCGACCTCGCTTCCCAGTGCTGC
GCAGAACCTATCTGTAGCTATCCAGACCAGCCAGGACTGGAAACCTACCCGCAGTCTCATCGAACACGTC
TTTGTCACGGATGTCACAGCCAACCTCATCACTGTCACCGTGAAGGAGTCGCCCACCAGCGTGGGCTTCT
TCAACTTGAGGCATTATTGA

Translation (519 aa):
MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEVQNR
KRGKRPRGRPRKHTVTSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSSDEEEDDSDLDSKRGPRGRET
HPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKAARRPVSLAKVLKTTRKDLGTSAAKLPPPLSAPVA
GLAALKAHTKEACGGPSTMATPENLASLMKGMAGSPSRGGIWQSSIVHYMNRMSQSQVQAASRLALKAQA
TNKCGLGLDLKVRTQKGGELGGSPAGGKVPKAPGGGAAEQQRGNHSGSPGAQLAPTQELSLQVLDLQSVK
NGVPGVGLLARHAPAKAIPATNPATGKGPGSGPTGANMTNAPTDNNKGEKLTCKATALPAPSVKRDTVKS
VAASGGQEGHTAPGEGRKPPALSELSTGEENSSSDSDPDSTSLPSAAQNLSVAIQTSQDWKPTRSLIEHV
FVTDVTANLITVTVKESPTSVGFFNLRHY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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