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Report for CCDS20064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20064.1 Public Mus musculus 6 Casp2 23 108 98 CCDS HistoryNCBI Gene:12366Re-query CCDS DB by CCDS ID:20064.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031895.12 ENSMUSP00000031895.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031895.12Link to Ensembl Protein Viewer:ENSMUSP00000031895.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031895Re-query CCDS DB by Protein ID:ENSMUSP00000031895
Original member NCBI NM_007610.2 NP_031636.1 Updated not alive Link to Nucleotide Sequence:NM_007610.2Link to Protein Sequence:NP_031636.1Re-query CCDS DB by Nucleotide ID:NM_007610Re-query CCDS DB by Protein ID:NP_031636
Current member NCBI NM_007610.3 NP_031636.1 Accepted alive Link to Nucleotide Sequence:NM_007610.3Link to Protein Sequence:NP_031636.1Re-query CCDS DB by Nucleotide ID:NM_007610Re-query CCDS DB by Protein ID:NP_031636Link to BLAST:NP_031636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031636.1 452 P29594 452 100% 0 0

Chromosomal Locations for CCDS 20064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42265124 42265197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42267499 42267649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42267894 42268061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42268207 42268288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42268886 42268980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42269280 42269456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42273917 42274045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42276695 42276785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42279777 42279926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42280084 42280193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42280346 42280477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGGCGGCGCCGAGCGGGAGGTCGCAGTCCTCCCTGCACAGGAAGGGGCTGATGGCGGCTGACAGGAGGA
GCAGGATTTTGGCAGTGTGTGGAATGCATCCTGACCACCAGGAAACACTGAAAAAGAATCGAGTGGTGCT
GGCCAAGCAGCTGCTGCTGAGCGAGCTGTTAGAACACCTCCTAGAGAAGGACATTATCACTTTGGAAATG
AGGGAGCTCATCCAGGCCAAAGGGGGCAGTTTCAGCCAGAATGTGGAACTCCTCAACCTGCTGCCAAAGA
GAGGACCCCAGGCTTTTGATGCCTTCTGTGAAGCCCTGCGGGAGACCAGGCAGGGTCACTTGGAAGACTT
ACTGCTCACAACCCTCTCAGATATTCAGCACGTACTCCCACCGTTGAGCTGTGACTATGACACAAGTCTC
CCTTTCTCGGTGTGTGAGTCCTGCCCTCCTCACAAGCAGCTCCGCCTATCCACAGATGCTACGGAACACT
CCTTAGATAATGGTGATGGTCCTCCCTGTCTTCTGGTGAAGCCATGCACTCCTGAGTTTTACCAGGCACA
CTACCAGCTGGCCTATAGGTTGCAATCTCAGCCCCGTGGCTTGGCACTGGTGCTGAGCAATGTGCACTTC
ACTGGAGAGAAAGACCTGGAATTCCGCTCTGGAGGGGATGTGGACCACACTACTCTAGTCACCCTCTTCA
AGCTTTTGGGCTACAATGTCCATGTGCTACATGACCAGACCGCACAGGAAATGCAAGAGAAACTTCAGAA
TTTTGCACAGTTACCTGCACACCGGGTCACAGACTCCTGCGTAGTGGCACTCCTCTCACATGGTGTGGAA
GGTGGCATCTATGGTGTAGATGGCAAACTGCTTCAGCTCCAAGAGGTTTTTCGACTTTTTGACAATGCTA
ACTGTCCAAGTCTACAGAACAAGCCAAAAATGTTCTTCATCCAAGCATGTCGTGGAGATGAGACAGATAG
AGGTGTCGACCAGCAAGATGGAAAGAACCACACACAATCCCCTGGATGTGAGGAGAGTGATGCTGGCAAA
GAGGAGTTGATGAAGATGAGACTGCCTACTCGCTCAGACATGATATGTGGCTATGCTTGCCTTAAAGGTA
ATGCTGCCATGCGGAACACCAAACGGGGTTCCTGGTACATTGAGGCCCTCACTCAGGTGTTCTCTGAAAG
AGCTTGTGACATGCACGTGGCCGACATGCTTGTTAAGGTGAATGCCCTTATCAAGGAGCGTGAAGGCTAT
GCCCCTGGCACAGAATTCCACCGATGCAAGGAGATGTCTGAGTACTGTAGTACTCTGTGCCAGCAACTCT
ACCTGTTCCCAGGCTACCCACCCACGTGA

Translation (452 aa):
MAAPSGRSQSSLHRKGLMAADRRSRILAVCGMHPDHQETLKKNRVVLAKQLLLSELLEHLLEKDIITLEM
RELIQAKGGSFSQNVELLNLLPKRGPQAFDAFCEALRETRQGHLEDLLLTTLSDIQHVLPPLSCDYDTSL
PFSVCESCPPHKQLRLSTDATEHSLDNGDGPPCLLVKPCTPEFYQAHYQLAYRLQSQPRGLALVLSNVHF
TGEKDLEFRSGGDVDHTTLVTLFKLLGYNVHVLHDQTAQEMQEKLQNFAQLPAHRVTDSCVVALLSHGVE
GGIYGVDGKLLQLQEVFRLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQDGKNHTQSPGCEESDAGK
EELMKMRLPTRSDMICGYACLKGNAAMRNTKRGSWYIEALTQVFSERACDMHVADMLVKVNALIKEREGY
APGTEFHRCKEMSEYCSTLCQQLYLFPGYPPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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