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Report for CCDS22731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22731.1 Public Mus musculus 8 Car5a 23 108 98 CCDS HistoryNCBI Gene:12352Re-query CCDS DB by CCDS ID:22731.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057653.7 ENSMUSP00000060457.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057653.7Link to Ensembl Protein Viewer:ENSMUSP00000060457.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057653Re-query CCDS DB by Protein ID:ENSMUSP00000060457
Original member Current member NCBI NM_007608.2 NP_031634.2 Accepted alive Link to Nucleotide Sequence:NM_007608.2Link to Protein Sequence:NP_031634.2Re-query CCDS DB by Nucleotide ID:NM_007608Re-query CCDS DB by Protein ID:NP_031634Link to BLAST:NP_031634.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031634.2 299 P23589 299 100% 0 0

Chromosomal Locations for CCDS 22731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 121916364 121916507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121917988 121918143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121923555 121923617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121923767 121923862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121927083 121927201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121939635 121939832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121944670 121944793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGCTCAGGAGAGACCCCCGCAAGCCCTTAGCCATCCTCAGGCATGTGGGACTTCTCTGTGCCACAGGGC
CACAGCGCTGGCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACACCCCCTCTGGAC
TGGCCCAGTGTCCTCAGCAGAAGGCACCCGGCAGTCTCCCATCAACATCCAGTGGAAGGACAGTGTGTAT
GACCCGCAGCTGGCACCACTCAGGGTCTCCTATGATGCCGCGTCCTGCAGATACCTCTGGAACACTGGCT
ACTTCTTCCAGGTGGAGTTTGACGATTCCTGTGAGGATTCAGGGATCAGCGGTGGGCCTCTGGGAAACCA
CTACAGGCTGAAGCAGTTTCATTTCCACTGGGGAGCAACAGATGAATGGGGCTCAGAGCACGCAGTGGAC
GGCCATACCTACCCAGCTGAGCTCCATCTGGTTCACTGGAATTCCACGAAATATGAAAATTACAAGAAAG
CCTCCGTGGGGGAGAACGGGCTGGCGGTCATCGGCGTGTTTCTGAAGCTCGGGGCGCATCACCAGGCCCT
GCAGAAGCTGGTGGATGTCTTGCCGGAAGTAAGACACAAGGATACACAGGTGGCCATGGGACCCTTTGAC
CCCTCTTGTCTGCTGCCTGCCTGCCGGGATTACTGGACCTACCCTGGCTCCCTCACCACCCCGCCACTTG
CTGAGTCAGTCACCTGGATTGTGCAGAAGACGCCTGTTGAGGTGTCCCCGAGCCAGCTATCCACGTTCCG
CACACTCTTGTTCTCCGGGCGAGGTGAGGAAGAGGATGTGATGGTGAACAACTACCGCCCGCTCCAGCCC
CTCAGGGACCGCAAACTTCGCTCGTCCTTCCGGCTTGATCGGACCAAGATGAGGTCTTAA

Translation (299 aa):
MLRRDPRKPLAILRHVGLLCATGPQRWRFQHSCAEEHSNCARHPLWTGPVSSAEGTRQSPINIQWKDSVY
DPQLAPLRVSYDAASCRYLWNTGYFFQVEFDDSCEDSGISGGPLGNHYRLKQFHFHWGATDEWGSEHAVD
GHTYPAELHLVHWNSTKYENYKKASVGENGLAVIGVFLKLGAHHQALQKLVDVLPEVRHKDTQVAMGPFD
PSCLLPACRDYWTYPGSLTTPPLAESVTWIVQKTPVEVSPSQLSTFRTLLFSGRGEEEDVMVNNYRPLQP
LRDRKLRSSFRLDRTKMRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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