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Report for CCDS27705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27705.1 Public Mus musculus 15 Tspo 23 108 98 CCDS HistoryNCBI Gene:12257Re-query CCDS DB by CCDS ID:27705.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047419.7 ENSMUSP00000037039.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047419.7Link to Ensembl Protein Viewer:ENSMUSP00000037039.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047419Re-query CCDS DB by Protein ID:ENSMUSP00000037039
Original member Current member NCBI NM_009775.4 NP_033905.3 Accepted alive Link to Nucleotide Sequence:NM_009775.4Link to Protein Sequence:NP_033905.3Re-query CCDS DB by Nucleotide ID:NM_009775Re-query CCDS DB by Protein ID:NP_033905Link to BLAST:NP_033905.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033905.3 169 P50637 169 100% 0 0

Chromosomal Locations for CCDS 27705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83571414 83571595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83572200 83572338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83573770 83573958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGCCTGAATCCTGGGTGCCTGCCGTGGGCCTCACTCTGGTGCCCAGCCTGGGGGGCTTCATGGGAGCCT
ACTTTGTACGTGGCGAGGGCCTCCGGTGGTATGCTAGCTTGCAGAAACCCTCTTGGCATCCGCCTCGCTG
GACACTGGCTCCCATCTGGGGCACACTGTATTCAGCCATGGGGTATGGCTCCTACATAGTCTGGAAAGAG
CTGGGAGGTTTCACAGAGGACGCTATGGTTCCCTTGGGTCTCTACACTGGTCAGCTGGCTCTGAACTGGG
CGTGGCCCCCCATCTTCTTTGGTGCCCGGCAGATGGGCTGGGCCTTGGCCGATCTTCTGCTTGTCAGTGG
GGTGGCGACTGCCACAACCCTGGCTTGGCACCGAGTGAGCCCGCCGGCTGCCCGCTTGCTGTACCCTTAC
CTGGCCTGGCTGGCTTTTGCCACCGTGCTCAACTACTATGTATGGCGTGATAACTCTGGCCGGCGAGGGG
GCTCCCGGCTCCCAGAGTGA

Translation (169 aa):
MPESWVPAVGLTLVPSLGGFMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKE
LGGFTEDAMVPLGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHRVSPPAARLLYPY
LAWLAFATVLNYYVWRDNSGRRGGSRLPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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