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Report for CCDS27311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27311.1 Public Mus musculus 14 Klf5 23 108 98 CCDS HistoryNCBI Gene:12224Re-query CCDS DB by CCDS ID:27311.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27311.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005279.7 ENSMUSP00000005279.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005279.7Link to Ensembl Protein Viewer:ENSMUSP00000005279.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005279Re-query CCDS DB by Protein ID:ENSMUSP00000005279
Original member Current member NCBI NM_009769.4 NP_033899.2 Accepted alive Link to Nucleotide Sequence:NM_009769.4Link to Protein Sequence:NP_033899.2Re-query CCDS DB by Nucleotide ID:NM_009769Re-query CCDS DB by Protein ID:NP_033899Link to BLAST:NP_033899.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033899.2 446 Q9Z0Z7 446 100% 0 0

Chromosomal Locations for CCDS 27311.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 99298995 99299222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99301381 99302254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99303418 99303477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99313151 99313329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGCCCACGCGGGTGCTGACCATGAGCGCCCGCCTGGGACCACTGCCCCAGCCGCCGGCCGCGCAGGACG
AGCCCGTGTTCGCGCAGCTCAAGCCGGTGCTGGGCGCTGCGAACCCGGCCCGCGACGCGGCGCTCTTCTC
CGGAGACGATCTGAAACACGCGCACCACCACCCGCCTGCGCCGCCGCCAGCCGCTGGCCCGCGACTGCCC
TCGGAGGAGCTGGTCCAGACAAGATGTGAAATGGAGAAGTATCTGACCCCTCAGCTCCCTCCAGTTCCGA
TAATTTCAGAGCATAAAAAGTATAGACGAGACAGTGCCTCAGTGGTAGACCAGTTCTTCACTGACACTGA
AGGCATACCTTACAGCATCAACATGAACGTCTTCCTCCCTGACATCACTCACCTGAGAACTGGCCTCTAC
AAATCCCAGAGACCATGCGTAACACAGATCAAGACAGAACCTGTTACCATTTTCAGCCACCAGAGCGAGT
CGACGGCCCCTCCTCCTCCTCCGGCCCCCACCCAGGCTCTCCCCGAGTTCACTAGTATCTTCAGCTCCCA
CCAGACCACAGCGCCACCACAGGAGGTGAACAATATCTTCATCAAACAAGAACTTCCTATACCAGATCTT
CATCTCTCTGTCCCTTCCCAGCAGGGCCACCTGTACCAGCTGTTGAATACACCGGATCTAGACATGCCCA
GTTCGACAAACCAGACGGCAGTAATGGACACCCTTAATGTTTCTATGGCAGGCCTTAACCCACACCCCTC
TGCTGTTCCACAGACGTCAATGAAACAGTTCCAGGGCATGCCCCCTTGCACGTACACCATGCCAAGTCAG
TTTCTTCCACAGCAGGCCACCTACTTTCCCCCGTCACCACCAAGCTCAGAGCCTGGAAGTCCCGATAGAC
AAGCTGAGATGCTGCAGAATCTCACCCCACCTCCGTCCTATGCCGCTACAATTGCTTCCAAACTGGCGAT
TCACAACCCAAATTTACCTGCCACTCTGCCAGTTAATTCGCCAACTCTCCCACCTGTCAGATACAACAGA
AGGAGTAACCCGGATCTGGAGAAGCGACGTATCCACTTCTGCGATTATAATGGTTGCACAAAAGTTTATA
CAAAGTCGTCTCACTTAAAAGCTCACCTGAGGACTCATACGGGCGAGAAGCCCTACAAGTGCACCTGGGA
GGGCTGCGACTGGAGGTTTGCCCGGTCGGATGAGCTGACCCGCCACTACAGGAAGCACACGGGCGCCAAG
CCGTTCCAGTGCATGGTGTGCCAACGCAGCTTCTCCCGCTCCGACCACCTCGCGCTGCACATGAAGCGCC
ACCAGAACTGA

Translation (446 aa):
MPTRVLTMSARLGPLPQPPAAQDEPVFAQLKPVLGAANPARDAALFSGDDLKHAHHHPPAPPPAAGPRLP
SEELVQTRCEMEKYLTPQLPPVPIISEHKKYRRDSASVVDQFFTDTEGIPYSINMNVFLPDITHLRTGLY
KSQRPCVTQIKTEPVTIFSHQSESTAPPPPPAPTQALPEFTSIFSSHQTTAPPQEVNNIFIKQELPIPDL
HLSVPSQQGHLYQLLNTPDLDMPSSTNQTAVMDTLNVSMAGLNPHPSAVPQTSMKQFQGMPPCTYTMPSQ
FLPQQATYFPPSPPSSEPGSPDRQAEMLQNLTPPPSYAATIASKLAIHNPNLPATLPVNSPTLPPVRYNR
RSNPDLEKRRIHFCDYNGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK
PFQCMVCQRSFSRSDHLALHMKRHQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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