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Report for CCDS27200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27200.1 Public Mus musculus 14 Blk 23 108 98 CCDS HistoryNCBI Gene:12143Re-query CCDS DB by CCDS ID:27200.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014597.4 ENSMUSP00000014597.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014597.4Link to Ensembl Protein Viewer:ENSMUSP00000014597.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000014597Re-query CCDS DB by Protein ID:ENSMUSP00000014597
Original member Current member NCBI NM_007549.2 NP_031575.2 Accepted alive Link to Nucleotide Sequence:NM_007549.2Link to Protein Sequence:NP_031575.2Re-query CCDS DB by Nucleotide ID:NM_007549Re-query CCDS DB by Protein ID:NP_031575Link to BLAST:NP_031575.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031575.2 499 P16277 499 100% 0 0

Chromosomal Locations for CCDS 27200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 63373392 63373597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63374191 63374322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63375896 63376046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63378468 63378544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63379623 63379802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63380702 63380854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63381184 63381330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63382636 63382739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63383929 63384027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63384839 63384932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63386420 63386471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63387722 63387826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGGGCTGCTGAGCAGCAAGAGGCAGGTCAGTGAGAAGGGCAAGGGCTGGAGCCCCGTGAAGATCCGCA
CCCAGGACAAGGCTCCCCCACCCCTGCCACCCCTGGTTGTCTTCAACCACCTTGCCCCACCATCTCCTAA
CCAGGACCCAGATGAAGAGGAGCGTTTTGTGGTGGCTCTGTTTGACTATGCCGCTGTGAATGACAGGGAC
CTTCAGGTGCTGAAGGGTGAGAAGCTCCAGGTCTTGAGGAGCACTGGAGACTGGTGGTTGGCCAGGTCAC
TCGTCACAGGAAGAGAAGGTTATGTGCCCAGCAACTTTGTGGCCCCAGTAGAGACTCTGGAAGTAGAAAA
ATGGTTCTTCAGGACCATCAGCCGGAAGGATGCTGAGAGGCAGTTGCTGGCTCCGATGAACAAGGCCGGC
TCCTTTCTCATCAGAGAGAGTGAGAGCAATAAAGGTGCCTTTTCCCTGTCCGTGAAAGATATCACCACCC
AGGGGGAGGTGGTCAAGCACTATAAGATCCGATCACTGGACAATGGAGGCTATTACATCTCCCCCCGGAT
CACCTTTCCCACCCTCCAGGCCCTGGTGCAGCACTATTCAAAGAAAGGGGATGGTTTGTGTCAGAAGTTG
ACTCTGCCCTGTGTGAACCTGGCCCCGAAGAACCTTTGGGCCCAAGATGAATGGGAAATCCCCAGGCAGT
CTCTCAAGTTGGTCCGGAAACTTGGGTCTGGGCAGTTTGGCGAAGTCTGGATGGGTTATTACAAAAATAA
CATGAAGGTGGCCATCAAGACCCTGAAGGAGGGAACCATGTCACCGGAAGCTTTCCTGGGCGAGGCCAAC
GTGATGAAAACCCTGCAGCATGAGAGGCTGGTTCGTCTCTACGCTGTGGTCACCAGAGAGCCCATTTACA
TCGTCACTGAATACATGGCCAGAGGATGCTTGCTGGATTTTCTGAAGACCGATGAAGGTAGCAGGTTGTC
CCTTCCAAGGCTGATTGACATGTCAGCCCAGGTTGCAGAGGGGATGGCTTACATAGAGCGCATGAATTCC
ATCCACCGTGACCTGCGGGCAGCCAACATCCTGGTGTCTGAGACGTTGTGCTGCAAAATCGCTGACTTCG
GCTTGGCCAGGATCATTGACAGTGAATACACTGCCCAAGAGGGGGCCAAGTTCCCCATCAAGTGGACCGC
CCCGGAGGCCATCCACTTCGGGGTGTTTACCATCAAGGCTGATGTGTGGTCCTTCGGAGTCTTGCTGATG
GAGATTGTCACCTATGGGCGCGTTCCCTACCCAGGAATGAGCAACCCTGAGGTCATCCGTAGCCTGGAGC
ACGGCTACCGAATGCCATGCCCGGAGACATGTCCACCGGAGTTGTACAATGATATCATCACTGAGTGCTG
GCGGGGCCGGCCAGAGGAGCGGCCTACCTTTGAGTTCCTGCAGTCGGTGTTGGAGGACTTCTACACAGCC
ACGGAGGGCCAATATGAGCTGCAGCCCTAG

Translation (499 aa):
MGLLSSKRQVSEKGKGWSPVKIRTQDKAPPPLPPLVVFNHLAPPSPNQDPDEEERFVVALFDYAAVNDRD
LQVLKGEKLQVLRSTGDWWLARSLVTGREGYVPSNFVAPVETLEVEKWFFRTISRKDAERQLLAPMNKAG
SFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKGDGLCQKL
TLPCVNLAPKNLWAQDEWEIPRQSLKLVRKLGSGQFGEVWMGYYKNNMKVAIKTLKEGTMSPEAFLGEAN
VMKTLQHERLVRLYAVVTREPIYIVTEYMARGCLLDFLKTDEGSRLSLPRLIDMSAQVAEGMAYIERMNS
IHRDLRAANILVSETLCCKIADFGLARIIDSEYTAQEGAKFPIKWTAPEAIHFGVFTIKADVWSFGVLLM
EIVTYGRVPYPGMSNPEVIRSLEHGYRMPCPETCPPELYNDIITECWRGRPEERPTFEFLQSVLEDFYTA
TEGQYELQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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