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Report for CCDS49258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49258.1 Public Mus musculus 13 Barx1 23 108 98 CCDS HistoryNCBI Gene:12022Re-query CCDS DB by CCDS ID:49258.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021813.4 ENSMUSP00000021813.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021813.4Link to Ensembl Protein Viewer:ENSMUSP00000021813.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021813Re-query CCDS DB by Protein ID:ENSMUSP00000021813
Original member Current member NCBI NM_007526.4 NP_031552.2 Accepted alive Link to Nucleotide Sequence:NM_007526.4Link to Protein Sequence:NP_031552.2Re-query CCDS DB by Nucleotide ID:NM_007526Re-query CCDS DB by Protein ID:NP_031552Link to BLAST:NP_031552.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031552.2 254 Q9ER42 254 100% 0 0

Chromosomal Locations for CCDS 49258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 48663117 48663339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48665026 48665317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48665401 48665485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48665828 48665992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGCAGCGGCCAGGGGAGCCGGGAGCCGCGCGCTTCGGTCCGCCCGAGGGCTGTGCGGATCACCGACCGC
ATCGCTACCGCAGCTTCATGATCGAAGAGATCCTCACTGAGCCTCCGGGGCCCAAGGGCGCAGCGCCCGC
GGCCGCCGCTGCCGCCGCGGGCGAGCTGCTCAAGTTCGGCGTACAGGCGCTGCTGGCCGCCCGGCCCTTC
CACAGCCACCTGGCGGTGCTGAAGGCTGAGCAGGCCGCAGTGTTCAAGTTCCCACTGGCGCCGCTCGGCT
GCTCCGGGCTGGGCTCGGCGTTGTTGGCCGCCGGGCCTGGGATGCCCGGCCCCGCAGGCGCATCGCACCT
GCCGCTGGAGCTGCAACTCCGCGGGAAGCTGGAAGCAGCTGGCTCTGGTGAACCTGGCGCGAAAGCCAAG
AAAGGACGCCGGAGTCGCACCGTATTCACTGAGCTGCAGCTGATGGGGCTGGAGAAACGCTTCGAGAAGC
AGAAGTACCTCTCTACCCCTGACAGAATAGATCTAGCTGAGTCCCTGGGCCTGAGCCAGTTACAGGTGAA
GACGTGGTATCAAAATCGGAGGATGAAATGGAAGAAAATAGTGCTGCAAGGTGGCGGCCTGGAGTCCCCC
ACCAAGCCCAAGGGACGGCCCAAGAAGAACTCCATCCCCACGAGCGAGCAGCTCACGGAGCAAGAGCGTG
CCAAGGAGACAGAGAAGCCAGCGGAGACGCCGGGCGAGCCCAGCGACCGAAATTGCGAGGACTGA

Translation (254 aa):
MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPF
HSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGMPGPAGASHLPLELQLRGKLEAAGSGEPGAKAK
KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESP
TKPKGRPKKNSIPTSEQLTEQERAKETEKPAETPGEPSDRNCED


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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