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Report for CCDS25575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25575.1 Public Mus musculus 11 Axin2 23 108 98 CCDS HistoryNCBI Gene:12006Re-query CCDS DB by CCDS ID:25575.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25575.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052915.13 ENSMUSP00000051331.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052915.13Link to Ensembl Protein Viewer:ENSMUSP00000051331.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052915Re-query CCDS DB by Protein ID:ENSMUSP00000051331
Original member Current member NCBI NM_015732.4 NP_056547.3 Accepted alive Link to Nucleotide Sequence:NM_015732.4Link to Protein Sequence:NP_056547.3Re-query CCDS DB by Nucleotide ID:NM_015732Re-query CCDS DB by Protein ID:NP_056547Link to BLAST:NP_056547.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056547.3 840 O88566 840 100% 0 0

Chromosomal Locations for CCDS 25575.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 108923288 108924102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108931439 108931579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108939312 108939414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108941903 108942043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108942191 108942696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108942935 108943129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108943656 108943886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108944510 108944605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108945880 108946047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108949269 108949395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGAGTAGCGCCGTGTTAGTGACTCTCCTTCCAGATCCCAGCAGCAGCTTCCGCGAGGATGCTCCGCGGC
CCCCGGTTCCGGGAGAAGAAGGGGAGACCCCACCGTGTCAGCCTAGTGTGGGCAAGGTCCAGTCCACCAA
ACCTATGCCCGTTTCCTCTAATGCTAGGCGGAATGAAGATGGACTGGGGGAGCCCGAGGGGCGGGCCTCC
CCCGATTCCCCTTTGACCAGGTGGACCAAGTCTTTACACTCCTTGTTGGGTGACCAGGATGGTGCATACC
TCTTCCGGACTTTCCTGGAGAGGGAGAAATGTGTGGATACGCTGGACTTCTGGTTTGCTTGTAATGGGTT
CAGGCAGATGAACCTGAAGGATACCAAAACTTTGCGAGTGGCCAAAGCAATCTATAAGAGGTACATTGAG
AACAACAGCGTTGTCTCCAAGCAGCTGAAGCCCGCCACCAAGACCTACATACGAGATGGCATCAAGAAGC
AACAGATCGGCTCGGTCATGTTTGACCAGGCACAGACCGAGATCCAGGCAGTGATGGAGGAAAATGCCTA
CCAGGTGTTCTTGACTTCTGACATTTACCTGGAATATGTGAGGAGTGGGGGGGAAAACACAGCTTACATG
AGTAACGGGGGACTGGGGAGCCTAAAGGTCTTATGTGGCTACCTCCCCACCTTGAATGAAGAAGAGGAGT
GGACGTGTGCCGACCTCAAGTGCAAACTCTCACCCACCGTGGTTGGCTTGTCCAGCAAAACTCTTCGGGC
CACCGCGAGTGTGAGATCCACGGAAACAGCTGAAAACGGATTCAGGTCCTTCAAGAGAAGCGACCCAGTC
AATCCTTATCACGTAGGTTCCGGCTATGTCTTTGCACCAGCCACCAGCGCCAACGACAGCGAGTTATCCA
GCGACGCACTGACCGACGATTCCATGTCCATGACGGACAGTAGCGTAGATGGAGTCCCTCCTTACCGCAT
GGGGAGTAAGAAACAGCTCCAGAGAGAGATGCATCGCAGTGTGAAGGCCAATGGCCAAGTGTCTCTACCT
CATTTTCCGAGAACCCACCGCCTGCCCAAGGAGATGACGCCTGTGGAACCTGCTGCCTTCGCCGCCGAGC
TCATCTCCAGGCTGGAGAAACTGAAACTGGAGCTGGAAAGCCGCCATAGTCTGGAGGAGCGGCTGCAGCA
GATCCGGGAGGATGAAGAAAAGGAGGGGTCTGAGCAGGCCCTGAGCTCACGGGATGGAGCACCGGTCCAG
CACCCCCTGGCCCTCCTACCCTCCGGCAGCTATGAAGAGGACCCACAAACCATTTTGGACGACCACCTCT
CCAGGGTCCTCAAGACCCCCGGCTGTCAATCCCCTGGTGTGGGTCGCTATAGCCCACGGTCCCGCTCCCC
CGACCACCACCACCAGCACCACCACCATCAGCAGTGTCATACCCTTCTTCCGACTGGGGGCAAGCTGCCC
CCCGTGGCTGCTTGCCCCCTCCTTGGAGGCAAGAGCTTCCTGACCAAACAGACGACGAAGCACGTTCACC
ACCACTACATCCACCACCACGCTGTCCCCAAGACCAAGGAGGAGATCGAGGCAGAAGCCACACAGAGAGT
CCGCTGCCTCTGTCCTGGGGGAACAGATTATTATTGCTACTCCAAATGCAAAAGCCACCCAAAGGCTCCA
GAGCCCCTGCCTGGGGAGCAGTTTTGTGGCAGCAGAGGTGGTACCTTGCCAAAACGGAATGCAAAGGGCA
CCGAACCGGGTCTTGCACTGTCGGCCAGGGATGGAGGGATGTCCAGTGCAGCGGGGGCCCCCCAGCTTCC
TGGGGAAGAAGGAGACCGGTCACAGGATGTCTGGCAGTGGATGTTAGAGAGTGAGCGGCAGAGCAAGTCC
AAGCCCCATAGTGCCCAAAGCATAAGAAAGAGCTACCCATTGGAGTCTGCCTGTGCGGCCCCAGGAGAAC
GAGTCAGCCGGCACCATCTGTTGGGGGCCAGCGGACACTCCCGCTCGGTGGCCCGGGCTCACCCATTTAC
CCAGGACCCTGCAATGCCTCCCCTTACCCCACCCAACACTTTGGCACAGCTAGAGGAAGCCTGCCGCAGG
CTGGCAGAGGTGTCGAAGCCCCAGAAGCAGCGGTGCTGCGTGGCCAGTCAGCAGAGGGACAGGAACCACT
CGGCTGCTGGTCAGGCAGGAGCCTCACCCTTCGCCAACCCAAGCCTGGCTCCAGAAGATCACAAAGAGCC
AAAGAAACTGGCAAGTGTCCACGCGCTCCAGGCCAGTGAGCTGGTTGTCACCTACTTTTTCTGTGGAGAA
GAAATTCCATACAGGAGGATGCTGAAGGCTCAAAGCTTGACCCTGGGCCACTTCAAGGAGCAGCTCAGCA
AAAAGGGAAATTACAGGTATTATTTCAAGAAGGCGAGTGACGAATTTGCCTGCGGAGCAGTTTTTGAGGA
GATCTGGGACGACGAGACAGTGCTCCCCATGTACGAAGGCAGGATCCTGGGCAAAGTGGAGAGGATCGAC
TGA

Translation (840 aa):
MSSAVLVTLLPDPSSSFREDAPRPPVPGEEGETPPCQPSVGKVQSTKPMPVSSNARRNEDGLGEPEGRAS
PDSPLTRWTKSLHSLLGDQDGAYLFRTFLEREKCVDTLDFWFACNGFRQMNLKDTKTLRVAKAIYKRYIE
NNSVVSKQLKPATKTYIRDGIKKQQIGSVMFDQAQTEIQAVMEENAYQVFLTSDIYLEYVRSGGENTAYM
SNGGLGSLKVLCGYLPTLNEEEEWTCADLKCKLSPTVVGLSSKTLRATASVRSTETAENGFRSFKRSDPV
NPYHVGSGYVFAPATSANDSELSSDALTDDSMSMTDSSVDGVPPYRMGSKKQLQREMHRSVKANGQVSLP
HFPRTHRLPKEMTPVEPAAFAAELISRLEKLKLELESRHSLEERLQQIREDEEKEGSEQALSSRDGAPVQ
HPLALLPSGSYEEDPQTILDDHLSRVLKTPGCQSPGVGRYSPRSRSPDHHHQHHHHQQCHTLLPTGGKLP
PVAACPLLGGKSFLTKQTTKHVHHHYIHHHAVPKTKEEIEAEATQRVRCLCPGGTDYYCYSKCKSHPKAP
EPLPGEQFCGSRGGTLPKRNAKGTEPGLALSARDGGMSSAAGAPQLPGEEGDRSQDVWQWMLESERQSKS
KPHSAQSIRKSYPLESACAAPGERVSRHHLLGASGHSRSVARAHPFTQDPAMPPLTPPNTLAQLEEACRR
LAEVSKPQKQRCCVASQQRDRNHSAAGQAGASPFANPSLAPEDHKEPKKLASVHALQASELVVTYFFCGE
EIPYRRMLKAQSLTLGHFKEQLSKKGNYRYYFKKASDEFACGAVFEEIWDDETVLPMYEGRILGKVERID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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