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Report for CCDS40358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40358.1 Public Mus musculus 8 Atp6v1b2 23 108 98 CCDS HistoryNCBI Gene:11966Re-query CCDS DB by CCDS ID:40358.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006435.7 ENSMUSP00000006435.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006435.7Link to Ensembl Protein Viewer:ENSMUSP00000006435.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006435Re-query CCDS DB by Protein ID:ENSMUSP00000006435
Original member Current member NCBI NM_007509.3 NP_031535.2 Accepted alive Link to Nucleotide Sequence:NM_007509.3Link to Protein Sequence:NP_031535.2Re-query CCDS DB by Nucleotide ID:NM_007509Re-query CCDS DB by Protein ID:NP_031535Link to BLAST:NP_031535.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031535.2 511 P62814 511 100% 0 0

Chromosomal Locations for CCDS 40358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69088793 69088928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69096220 69096275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69101365 69101463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69101936 69102029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69102164 69102241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69102451 69102590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69102762 69102863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69103380 69103477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69103645 69103768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69105809 69105959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69107582 69107664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69108283 69108387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69109880 69110009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69112430 69112569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGCGTTGCGAGCGATGCGGGGAATCGTGAACGGGGCCGCACCCGAACTGCCCGTGCCCACCGGTGGGC
CGATGGCCGGAGCTCGGGAGCAGGCGCTGGCGGTGAGCCGGAACTACCTATCCCAGCCTCGTCTCACCTA
CAAGACTGTCTCTGGGGTGAATGGTCCACTAGTGATCCTAGATCATGTGAAGTTTCCCAGATACGCTGAG
ATTGTCCACTTGACATTACCAGATGGCACAAAGAGAAGTGGGCAAGTCCTAGAAGTTAGTGGCTCCAAAG
CAGTGGTTCAGGTATTTGAAGGGACATCTGGTATAGACGCCAAGAAAACATCCTGTGAGTTTACTGGAGA
TATTCTCCGAACACCAGTGTCTGAGGATATGCTTGGTCGAGTATTCAACGGATCAGGAAAACCCATTGAC
CGAGGCCCTGTGGTGCTGGCTGAAGACTTCCTTGACATCATGGGTCAGCCAATCAACCCTCAGTGTCGGA
TCTATCCAGAAGAGATGATTCAGACGGGCATTTCCGCCATCGATGGCATGAACAGTATTGCTAGGGGACA
GAAAATCCCCATCTTTTCTGCTGCTGGATTACCACACAACGAGATTGCAGCTCAGATCTGTCGCCAGGCT
GGTTTGGTAAAGAAATCCAAAGATGTAGTGGACTATAGTGAAGAAAATTTTGCCATTGTGTTTGCTGCTA
TGGGAGTAAACATGGAAACAGCCCGGTTCTTTAAATCTGACTTTGAAGAAAATGGCTCAATGGACAATGT
CTGCCTTTTTTTGAATCTGGCTAATGACCCAACCATTGAGCGGATCATCACTCCTCGCCTGGCTCTGACC
ACGGCCGAGTTTCTGGCATATCAGTGTGAGAAGCACGTGCTGGTGATCCTGACGGACATGAGCTCCTACG
CTGAAGCGCTGCGAGAGGTTTCAGCTGCCAGGGAAGAGGTCCCTGGTCGGCGAGGCTTCCCAGGCTACAT
GTATACCGACTTAGCCACAATCTATGAACGTGCCGGTCGAGTGGAAGGTAGAAACGGCTCTATTACCCAA
ATCCCTATTCTCACCATGCCCAATGACGATATCACTCATCCCATCCCTGACTTGACTGGGTACATTACTG
AGGGCCAGATCTATGTGGACAGACAGCTGCACAACAGACAGATTTACCCTCCTATTAATGTGCTGCCCTC
ACTCTCTCGGTTAATGAAGTCAGCTATCGGAGAAGGAATGACCAGAAAGGATCACGCTGATGTGTCTAAC
CAGTTGTATGCGTGCTATGCCATCGGTAAGGACGTGCAAGCCATGAAAGCCGTGGTGGGAGAGGAAGCCC
TGACCTCAGATGATCTCCTTTACCTGGAATTTCTGCAGAAGTTTGAGAAGAACTTCATTACTCAGGGTCC
CTATGAAAACCGAACTGTTTATGAGACTTTGGACATTGGCTGGCAGTTGCTTCGAATCTTCCCCAAAGAA
ATGCTGAAGAGAATCCCTCAGAGCACCCTGAGCGAATTTTACCCTCGAGACTCTGCAAAACACTAG

Translation (511 aa):
MALRAMRGIVNGAAPELPVPTGGPMAGAREQALAVSRNYLSQPRLTYKTVSGVNGPLVILDHVKFPRYAE
IVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPID
RGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQA
GLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALT
TAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQ
IPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN
QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFITQGPYENRTVYETLDIGWQLLRIFPKE
MLKRIPQSTLSEFYPRDSAKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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