NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21512.1 Public Mus musculus 7 Art2b 23 108 98 CCDS HistoryNCBI Gene:11872Re-query CCDS DB by CCDS ID:21512.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063920.2 ENSMUSP00000065658.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063920.2Link to Ensembl Protein Viewer:ENSMUSP00000065658.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000063920Re-query CCDS DB by Protein ID:ENSMUSP00000065658
Original member Current member NCBI NM_019915.3 NP_064299.2 Accepted alive Link to Nucleotide Sequence:NM_019915.3Link to Protein Sequence:NP_064299.2Re-query CCDS DB by Nucleotide ID:NM_019915Re-query CCDS DB by Protein ID:NP_064299Link to BLAST:NP_064299.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064299.2 289 O35975 289 100% 0 0

Chromosomal Locations for CCDS 21512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101578860 101578942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101579904 101580639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101581111 101581161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGACATCAAAAATTTTCAAGTTCTTCCTAACTTGGTGGCTAACCCAGCAGGTGACTGGCCTTGCAGTGC
CTTTCATGCTAGACATGGCTCCTAATGCATTTGATGATCAGTATGAGAGCTGTGTCGAAGACATGGAGAA
AAAGGCACCCCAGCTGTTACAAGAAGACTTCAACATGAATGAGGAATTAAAACTTGAGTGGGAAAAAGCA
GAGATAAATTGGAAAGAGATCAAAAACAGTACGAGTTATCCGGCAGGTTTCCATGATTTCCATGGGACAG
CTTTAGTTGCCTACACTGGGAACCTCGCTATAGATTTTAACAGAGCTGTTAGAGACTTCAAGAAAAGTCC
GGATAACTTCCACTACAAGGCCTTCCATTACTACTTAACAAGAGCTGTTCAGCTTTTGAATGACCAGGGT
TGTAGTTTAGTTTACCGAGGTACTAAAGTCATGTTTGAATACACTGGGAAGGGCTCTGTGCGATTTGGGC
AGTTCAGTTCTTCATCTTTAACAAAGAGAGTAGCTCTTTCTTCAAATTTTTTCAGTAATCATGGGACACT
ATTTATCATCAGAACCTGCTTGGGGGTTAATATCAAAGAATTCTCCTCATTCCCTCGTGAAGAGGAGGTG
TTAATTCCAGGCTATGAAGTATATCACAAAGTCACAGCACAAAATGATAATGGGTATAATGAAATATTTC
TGGACTCCCCAGAAAGGAAGAAGAGCAACTTCAATTGCTTCTATAATGGTTCTGCTCAAACAGTCAACAT
TGATTTCAGTATATCAGGATCCAGAGAGAGCTGTGTATCCCTGTTCCTTGTGGTTCTCCTCGGTCTTCTG
GTCCAGCAGCTTACTCTTGCTGAGCTGTAG

Translation (289 aa):
MTSKIFKFFLTWWLTQQVTGLAVPFMLDMAPNAFDDQYESCVEDMEKKAPQLLQEDFNMNEELKLEWEKA
EINWKEIKNSTSYPAGFHDFHGTALVAYTGNLAIDFNRAVRDFKKSPDNFHYKAFHYYLTRAVQLLNDQG
CSLVYRGTKVMFEYTGKGSVRFGQFSSSSLTKRVALSSNFFSNHGTLFIIRTCLGVNIKEFSSFPREEEV
LIPGYEVYHKVTAQNDNGYNEIFLDSPERKKSNFNCFYNGSAQTVNIDFSISGSRESCVSLFLVVLLGLL
VQQLTLAEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH