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Report for CCDS29427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29427.1 Public Mus musculus 19 Rhod 23 108 98 CCDS HistoryNCBI Gene:11854Re-query CCDS DB by CCDS ID:29427.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048197.9 ENSMUSP00000036031.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048197.9Link to Ensembl Protein Viewer:ENSMUSP00000036031.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000048197Re-query CCDS DB by Protein ID:ENSMUSP00000036031
Original member Current member NCBI NM_007485.5 NP_031511.1 Accepted alive Link to Nucleotide Sequence:NM_007485.5Link to Protein Sequence:NP_031511.1Re-query CCDS DB by Nucleotide ID:NM_007485Re-query CCDS DB by Protein ID:NP_031511Link to BLAST:NP_031511.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031511.1 210 P97348 210 100% 0 0

Chromosomal Locations for CCDS 29427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4426089 4426256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4426627 4426761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4432055 4432164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4432768 4432855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4439220 4439351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGAACGCGTCCCAGGTTGCGGGAGAAGAGGCGCCGCAGAGCGGGCACTCGGTCAAGGTGGTCCTGGTGG
GCGACGGGGGCTGCGGGAAGACGTCACTGATGATGGTCTTCGCCAAAGGGGCCTTCCCAGAGAGCTACAG
TCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGG
GACACAGCCGGGCAAGATGACTATGACCGCCTCCGGCCCTTGTTCTATCCTGATGCCAATGTCTTGCTCC
TCTGCTTCGATGTGACCAATCCAAACAGCTTTGACAACGTCTCCAACCGGTGGTACCCAGAGGTGACACA
TTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTG
AACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGGGGCCACGATATGGCAAGGTCTGTGG
GAGCGGTGGCCTATCTTGAGTGTTCAGCTCGGCTCCATGACAACGTGGAAGCCGTCTTCCAGGAAGCAGC
AGAAGTGGCTCTCAGCAGTCGCAGACATAACTTTTGGCGGCGGATTACTCAGAATTGTTGCTTGGCCACC
TGA

Translation (210 aa):
MNASQVAGEEAPQSGHSVKVVLVGDGGCGKTSLMMVFAKGAFPESYSPTVFERYNATLQMKGKPVHLQIW
DTAGQDDYDRLRPLFYPDANVLLLCFDVTNPNSFDNVSNRWYPEVTHFCKGVPIIVVGCKIDLRKDKVLV
NNLRKKRLEPVTYHRGHDMARSVGAVAYLECSARLHDNVEAVFQEAAEVALSSRRHNFWRRITQNCCLAT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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