NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40575.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40575.2 Public Mus musculus 9 Tirap 23 108 98 CCDS HistoryNCBI Gene:117149Re-query CCDS DB by CCDS ID:40575.2See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 40575.1
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon would result in a protein that is 8 aa longer. The uAUG has a weak Kozak signal and appears to be rodent-specific. This means that the downstream AUG, which has a strong Kozak signal and is well-conserved, may also be used due to leaky scanning.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40575.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176531.7 ENSMUSP00000135224.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176531.7Link to Ensembl Protein Viewer:ENSMUSP00000135224.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176531Re-query CCDS DB by Protein ID:ENSMUSP00000135224
Original member Current member EBI ENSMUST00000175765.7 ENSMUSP00000135435.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175765.7Link to Ensembl Protein Viewer:ENSMUSP00000135435.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175765Re-query CCDS DB by Protein ID:ENSMUSP00000135435
Original member Current member EBI ENSMUST00000177129.7 ENSMUSP00000135462.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177129.7Link to Ensembl Protein Viewer:ENSMUSP00000135462.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177129Re-query CCDS DB by Protein ID:ENSMUSP00000135462
Original member Current member EBI ENSMUST00000176685.7 ENSMUSP00000135876.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176685.7Link to Ensembl Protein Viewer:ENSMUSP00000135876.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176685Re-query CCDS DB by Protein ID:ENSMUSP00000135876
Original member Current member NCBI NM_001177845.1 NP_001171316.1 Accepted alive Link to Nucleotide Sequence:NM_001177845.1Link to Protein Sequence:NP_001171316.1Re-query CCDS DB by Nucleotide ID:NM_001177845Re-query CCDS DB by Protein ID:NP_001171316Link to BLAST:NP_001171316.1
Original member Current member NCBI NM_001177846.1 NP_001171317.1 Accepted alive Link to Nucleotide Sequence:NM_001177846.1Link to Protein Sequence:NP_001171317.1Re-query CCDS DB by Nucleotide ID:NM_001177846Re-query CCDS DB by Protein ID:NP_001171317Link to BLAST:NP_001171317.1
Original member Current member NCBI NM_001177847.1 NP_001171318.1 Accepted alive Link to Nucleotide Sequence:NM_001177847.1Link to Protein Sequence:NP_001171318.1Re-query CCDS DB by Nucleotide ID:NM_001177847Re-query CCDS DB by Protein ID:NP_001171318Link to BLAST:NP_001171318.1
Original member Current member NCBI NM_054096.2 NP_473437.2 Accepted alive Link to Nucleotide Sequence:NM_054096.2Link to Protein Sequence:NP_473437.2Re-query CCDS DB by Nucleotide ID:NM_054096Re-query CCDS DB by Protein ID:NP_473437Link to BLAST:NP_473437.2

Chromosomal Locations for CCDS 40575.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35187911 35187930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35188657 35189295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35191018 35191108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGTTAGTTTGGAGGCCTGCACTATGGCTTCATCCTCCTCCGTCCCAGCCTCCTCCACTCCGTCCAAGA
AGCCTCGAGACAAGATAGCTGACTGGTTCAGGCAGGCTCTGTTGAAGAAGCCCAAGAAGATGCCGATCTC
CCAGGAAAGCCACCTCTATGATGGTTCACAGACAGCCACACAGGATGGTCTCTCACCCTCGAGCTGCAGC
TCACCCCCGAGTCACAGTTCACCGGAGAGCCGTAGCTCACCCTCGAGCTGCAGTTCAGGAATGTCACCTA
CCTCGCCACCAACACACGTGGACAGCAGCAGCAGCAGCAGTGGCCGCTGGAGCAAAGACTACGATGTCTG
CGTGTGCCACAGTGAGGAGGACTTGGAGGCGGCCCAGGAGCTGGTCTCCTACTTGGAGGGTAGCCAGGCC
AGTCTACGCTGCTTCCTGCAGCTTCGGGATGCAGCCCCGGGTGGCGCCATTGTTTCGGAGCTATGCCAGG
CACTGAGTCGTAGTCACTGCCGTGTGCTGCTCATCACTCCAGGCTTCCTTCGGGACCCCTGGTGCAAGTA
CCAGATGCTGCAGGCCCTGACGGAGGCCCCGGCGTCGGAGGGTTGCACCATACCCCTGCTGTCCGGCCTG
TCCAGAGCCGCCTATCCGCCGGAACTCCGATTCATGTACTATGTGGATGGCAGAGGCAAGGACGGAGGCT
TTTACCAAGTCAAGGAGGCTGTTATACACTATCTGGAGACACTAAGCTGA

Translation (249 aa):
MVSLEACTMASSSSVPASSTPSKKPRDKIADWFRQALLKKPKKMPISQESHLYDGSQTATQDGLSPSSCS
SPPSHSSPESRSSPSSCSSGMSPTSPPTHVDSSSSSSGRWSKDYDVCVCHSEEDLEAAQELVSYLEGSQA
SLRCFLQLRDAAPGGAIVSELCQALSRSHCRVLLITPGFLRDPWCKYQMLQALTEAPASEGCTIPLLSGL
SRAAYPPELRFMYYVDGRGKDGGFYQVKEAVIHYLETLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH