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Report for CCDS19583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19583.1 Public Mus musculus 5 Pop5 23 108 98 CCDS HistoryNCBI Gene:117109Re-query CCDS DB by CCDS ID:19583.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19583.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081497.12 ENSMUSP00000080215.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081497.12Link to Ensembl Protein Viewer:ENSMUSP00000080215.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081497Re-query CCDS DB by Protein ID:ENSMUSP00000080215
Original member Current member EBI ENSMUST00000135455.1 ENSMUSP00000118408.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135455.1Link to Ensembl Protein Viewer:ENSMUSP00000118408.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135455Re-query CCDS DB by Protein ID:ENSMUSP00000118408
Original member NCBI NM_026398.4 NP_080674.1 Updated not alive Link to Nucleotide Sequence:NM_026398.4Link to Protein Sequence:NP_080674.1Re-query CCDS DB by Nucleotide ID:NM_026398Re-query CCDS DB by Protein ID:NP_080674
Current member NCBI NM_026398.5 NP_080674.1 Accepted alive Link to Nucleotide Sequence:NM_026398.5Link to Protein Sequence:NP_080674.1Re-query CCDS DB by Nucleotide ID:NM_026398Re-query CCDS DB by Protein ID:NP_080674Link to BLAST:NP_080674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080674.1 169 Q9DB28 169 100% 0 0

Chromosomal Locations for CCDS 19583.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115238050 115238069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115238135 115238277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115240162 115240311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115240473 115240556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115240639 115240751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGGTGCGGTTCAAGCACAGGTACCTTCTGTGCGAGCTGGTGTCCGAGGACGCGCGCTGCCGTTTGAGCC
TGGACGACCGCGTGCTGGGCGGGCTGGTCCGCGACACGATCGCCCGGGTGCACGGGGCCTTCGGCGCCGC
CGCCTGCTCCGTGGGCTTTGCAGTCCGATACCTCAATGCCTACACTGGAGTCGTGCTACTGCGATGCCGG
AAGGATTTCTACCAGCTCGTGTGGTCAGCTCTTCCTTTCATCACCTATTTGGAGAACAAAGGCCACCGTT
ACCCGTGCTTCTTCAACACATTACACGTGGGAGGTACCATCAGAACCTGTCAGAAGTTCCTGATCCAGTA
CAACAGGAGACAGCTGCTGATCTTGTTGCAGAATTGCACTGACGAAGGAGAGCGGGAAGCCATCAAGAAG
TCTGTCTCAAGAAGCTGTCTGCTGGACAGAGAGCCCGTTGAAGAGCTTTCAGACAGTGCTGGTGAGGAGG
TTGCAGAAGCAATGGAGTGA

Translation (169 aa):
MVRFKHRYLLCELVSEDARCRLSLDDRVLGGLVRDTIARVHGAFGAAACSVGFAVRYLNAYTGVVLLRCR
KDFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQKFLIQYNRRQLLILLQNCTDEGEREAIKK
SVSRSCLLDREPVEELSDSAGEEVAEAME


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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