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Report for CCDS17938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17938.1 Public Mus musculus 4 Tgs1 23 108 98 CCDS HistoryNCBI Gene:116940Re-query CCDS DB by CCDS ID:17938.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17938.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052712.5 ENSMUSP00000054112.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052712.5Link to Ensembl Protein Viewer:ENSMUSP00000054112.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052712Re-query CCDS DB by Protein ID:ENSMUSP00000054112
Original member Current member NCBI NM_054089.4 NP_473430.3 Accepted alive Link to Nucleotide Sequence:NM_054089.4Link to Protein Sequence:NP_473430.3Re-query CCDS DB by Nucleotide ID:NM_054089Re-query CCDS DB by Protein ID:NP_473430Link to BLAST:NP_473430.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473430.3 853 Q923W1 853 100% 0 0

Chromosomal Locations for CCDS 17938.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 3575026 3575129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3583425 3583489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3585031 3585188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3585452 3586265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3589147 3589264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3591228 3591314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3593460 3593637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3595357 3595657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3598514 3598663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3602147 3602290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3604699 3604915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3605823 3605901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3614859 3615005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGTGTTGCGAGAAGTGGAACCATGTGGCCGAAATGCTGCTCTTCATTGAAGACCGCGAGGAGGAGTACA
AGATCCTTTGCCTCTGCTCCCGGGCATTTGTGGAAGATCGAAAATTGTACAATTTGGGATTAAAAGGCTA
CTATGTCAAAAGCAGTGGCAATAATGCAGGAGACCAAGGTACAGAAGAGGAGGAAGATGGTCATTCCAAT
GGCACTGCAGAATCACATAGCCCAAATGAAAGTGACCTTGATTCTGAGGCCAAACTCATGAGAAGTATGG
GACTACCAATTCAGTTTGGTAGAATGTCTTCACATGAGAATTTTGAGATGTCTATGAATGCAAGAAATAA
AGCTAAAGTAAAGCAAAAAAGAAGAAAACACCAGAAGCGGTATTTAGATGAAATGGTTCGGGAATCCTGG
AGAAATGACTATGAAGAAGATGACCTTGTAGTGTCAGATGACCCATCTTCAGTTGAACACTGTGAGAACA
ACAGAACATGTGAAATTCAAAGCAAAGCAGGTTCTGAAGTAGAAAACCTTCCTGTTGAAAATACACTGGC
ACCAAAGCTAGAGGTCCCAGAGAATTGGGAAAAGTACTGGAATGAATATGGAGAAGGGCTGTTGTGGCAA
AGCTGGCAGGAGAAGTATCCAGACCAGACACTGTCTTCTGAGCCTTGGAACCTCCCTGATACAAAGGAAG
AATGGGAACAACATTACAGTCAGCTTTATTGGTATTATTTGGAACAATTTCAGTATTGGGAAGCTCAGGG
CTGGACTTTTACTGCCTCACAAAACTGTGATAAAGATGTTTACACATCTCACACAGAAGTAGACCAGAAT
GCTGAGAGCAGCCTGAAAGCAGATGTAATGACTTTTTCATCTTCACCTAATATAGTTGAGGATGAAATCC
CTGGCTCAAATGATAATGACCACAATGAAATTATTACTGCGATTAACAACATAACTGTGAGTGCAGAGAA
AGTAGAACAGAGCCAGTTAGATTCCTCTCAACACTGTGACGAGCCGCTCAGTGAAATCACTGGGAAAGAG
TGCCCTGCCTCTGGAGGAAGTGACTCCTGTAATGGAACACCCAAAGAAAATGATATATCTGAGAACAGAA
GCTCAGACCAACCAGCTAAAGAGTTGCAGGAGTCTTCAGGAACAAATAAAGGTAAACATAGACCACACCA
TAATGGGGCTGATGGACATGAGAGTGACGATGACCCACCTGAGCATAAGCCCAGCAAAGTGAAGAGAAGC
CATGAATTGGATGTTGATGAAAACCCAGATTCAGAAGTTGATGACAATGGTTTCCTTCTAGGATTCAAGC
ATGGCTCAGGACAAAAATATGGTGGAATTCCAAATTTCAGCCATCGACAGGTCAGGTATCTAGAGAAGAA
TGTGAAATACAAATCAAAGTACCTGGATCTGCGCAAGCAGATGCCTGTGAAGAGCAAGCACATCCTGTTC
ACCGAGGACTCAGGGAAACCTTTTGTCGTGTGTAAGAGTAAAGTACGGAGTAAGGTAGAAAAATTCCTAA
AATGGGTTAATGAACGAGTAGATGAGGAGACATCACAGGATTCTCTTTCTCAAAACAAAATGCAAGACAC
TTGCACAAGCAGTGACTCAGAGGAACAAGACATGTCCTTGGAGAAAGCTGACAACCTGATGGAGACCAGA
GATCCAGAACCTGAAAAATGTCAGATCATCTCTTCAGCCACTGAACTTGAAGCAGAAAAGAGTGAAGTAG
GCTCCTTAGTAGCAACTGTTCCAGAGAACTGTTCAACTGAAGAAATACCAAACTCTCCCCATGCAGAAAC
AGAAGTTGAAATAAAGAAGAAAAAGAAGAAGAACAAGAACAAAAAGATAAATGATCTACCACCTGAAATA
GCTTCTGTTCCAGAGCTGGCTAAATACTGGGCCCAGAGATACAGGCTCTTCTCTCGCTTTGATGATGGAA
TCAAATTGGACAAAGAGGGCTGGTTTTCAGTCACTCCTGAGAAGATTGCTGAACACATTGCTGGCCGTGT
CAGTCAGGCCTTCAGATGTGACGTTGTAGTAGATGCTTTCTGTGGAGTTGGAGGAAATACCATTCAGTTT
GCCTTAACCGGGAAAAGAGTGATTGCTATTGATATCGACCCTGTTAAAATTGATCTTGCTCGGAATAATG
CTGAAGTTTATGGGATAGCAGATAAAATAGAGTTTATCTGTGGAGATTTCCTGCTCTTGGCTCCATGTTT
AAAAGCTGATGTTGTGTTCCTAAGTCCACCTTGGGGAGGGCCAGATTATGCTACTGCAGAGACCTTCGAC
ATTAGGACAATGATGTCTCCTGATGGCTTTGAAATTTTCAGGCTTTCCCAGAAGATCACTAATAATATTG
TTTATTTTCTTCCAAGAAATGCTGATATTGACCAGGTGGCATCCTTGGCTGGGCTTGGAGGACAAGTGGA
AATAGAACAGAACTTTCTTAACAACAAGTTAAAGACCATCACTGCATACTTTGGTGACCTGATCAGAAGA
CCAGCACTTCTGAAGACCAGCACTTCTGAAGCGGAAGTGTGA

Translation (853 aa):
MCCEKWNHVAEMLLFIEDREEEYKILCLCSRAFVEDRKLYNLGLKGYYVKSSGNNAGDQGTEEEEDGHSN
GTAESHSPNESDLDSEAKLMRSMGLPIQFGRMSSHENFEMSMNARNKAKVKQKRRKHQKRYLDEMVRESW
RNDYEEDDLVVSDDPSSVEHCENNRTCEIQSKAGSEVENLPVENTLAPKLEVPENWEKYWNEYGEGLLWQ
SWQEKYPDQTLSSEPWNLPDTKEEWEQHYSQLYWYYLEQFQYWEAQGWTFTASQNCDKDVYTSHTEVDQN
AESSLKADVMTFSSSPNIVEDEIPGSNDNDHNEIITAINNITVSAEKVEQSQLDSSQHCDEPLSEITGKE
CPASGGSDSCNGTPKENDISENRSSDQPAKELQESSGTNKGKHRPHHNGADGHESDDDPPEHKPSKVKRS
HELDVDENPDSEVDDNGFLLGFKHGSGQKYGGIPNFSHRQVRYLEKNVKYKSKYLDLRKQMPVKSKHILF
TEDSGKPFVVCKSKVRSKVEKFLKWVNERVDEETSQDSLSQNKMQDTCTSSDSEEQDMSLEKADNLMETR
DPEPEKCQIISSATELEAEKSEVGSLVATVPENCSTEEIPNSPHAETEVEIKKKKKKNKNKKINDLPPEI
ASVPELAKYWAQRYRLFSRFDDGIKLDKEGWFSVTPEKIAEHIAGRVSQAFRCDVVVDAFCGVGGNTIQF
ALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLAPCLKADVVFLSPPWGGPDYATAETFD
IRTMMSPDGFEIFRLSQKITNNIVYFLPRNADIDQVASLAGLGGQVEIEQNFLNNKLKTITAYFGDLIRR
PALLKTSTSEAEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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