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Report for CCDS24886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24886.1 Public Mus musculus 11 Alox8 23 108 98 CCDS HistoryNCBI Gene:11688Re-query CCDS DB by CCDS ID:24886.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021262.9 ENSMUSP00000021262.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021262.9Link to Ensembl Protein Viewer:ENSMUSP00000021262.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021262Re-query CCDS DB by Protein ID:ENSMUSP00000021262
Original member Current member NCBI NM_009661.4 NP_033791.1 Accepted alive Link to Nucleotide Sequence:NM_009661.4Link to Protein Sequence:NP_033791.1Re-query CCDS DB by Nucleotide ID:NM_009661Re-query CCDS DB by Protein ID:NP_033791Link to BLAST:NP_033791.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033791.1 677 O35936 677 100% 0 0

Chromosomal Locations for CCDS 24886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69185090 69185269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69185718 69185888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69185971 69186071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69186171 69186292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69186463 69186632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69186749 69186835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69187663 69187866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69187974 69188120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69188609 69188781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69189835 69189938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69191524 69191646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69197025 69197106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69197353 69197575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69197663 69197809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGGCGAAATGCAGGGTGAGAGTATCCACGGGGGAAGCCTGTGGGGCTGGCACATGGGACAAAGTGTCTG
TCAGCATCGTGGGAACCCACGGAGAGAGCCCCTTAGTACCTCTGGACCATCTGGGCAAGGAGTTCAGCGC
CGGTGCTGAAGAAGACTTCGAGGTGACGCTTCCCCAGGACGTAGGCACTGTGCTGATGCTGCGAGTCCAC
AAAGCACCCCCGGAAGTGTCCCTCCCGCTTATGTCTTTCCGTTCTGATGCCTGGTTCTGCCGCTGGTTCG
AGCTGGAGTGGCTACCTGGGGCTGCACTCCACTTCCCCTGTTATCAGTGGCTGGAAGGGGCGGGGGAGCT
GGTGCTGAGAGAGGGAGCAGCAAAGGTGTCCTGGCAAGACCATCACCCTACACTGCAGGATCAGCGCCAG
AAGGAGCTTGAGTCCAGGCAGAAGATGTACAGCTGGAAGACTTACATTGAAGGTTGGCCTCGCTGCCTTG
ACCACGAGACTGTGAAAGACTTGGACCTCAACATCAAGTACTCTGCGATGAAGAATGCCAAACTCTTCTT
TAAAGCCCACTCCGCGTATACGGAGCTGAAAGTCAAAGGGCTCCTGGACCGCACAGGACTCTGGAGGAGT
CTGAGGGAGATGAGAAGGCTGTTTAACTTCCGCAAGACTCCAGCAGCAGAGTATGTGTTTGCACACTGGC
AGGAAGATGCCTTCTTCGCCTCCCAGTTCCTAAATGGCATCAACCCGGTCCTGATTCGCCGCTGTCACAG
TCTCCCAAACAACTTCCCGGTCACTGATGAAATGGTGGCCCCAGTGCTGGGCCCTGGAACCAGTCTGCAG
GCTGAGTTGGAGAAGGGCTCCCTGTTCTTGGTGGATCATGGCATTCTTTCTGGAGTCCACACCAACATCC
TCAATGGAAAGCCTCAGTTCTCTGCAGCCCCGATGACCCTGTTACACCAGAGCTCAGGGTCCGGACCCCT
GCTTCCCATTGCCATCCAGCTCAAACAGACTCCCGGGCCAGACAACCCCATCTTCCTGCCCAGCGATGAC
ACGTGGGACTGGTTGCTGGCCAAGACCTGGGTTCGCAATTCTGAGTTTTACATCCATGAGGCTGTCACAC
ATCTGCTGCATGCCCATCTGATTCCAGAAGTCTTTGCCTTGGCCACATTACGTCAGCTGCCTAGGTGTCA
CCCTCTCTTCAAGCTATTGATTCCTCACATTCGGTACACACTGCACATCAACACGCTTGCCCGGGAGCTG
CTCGTTGCCCCTGGGAAGTTGATAGACAAGTCCACAGGCCTTGGCACTGGGGGATTCTCTGACCTGATAA
AGAGAAACATGGAGCAGCTGAACTACTCTGTCCTGTGTCTCCCTGAAGATATCCGAGCCCGAGGTGTGGA
AGACATCCCAGGCTACTATTACCGAGATGATGGGATGCAGATCTGGGGGGCAATAAAGAGCTTTGTCTCT
GAAATAGTCAGCATCTACTATCCAAGTGACACATCCGTCCAAGATGACCAAGAGCTCCAGGCCTGGGTGA
GGGAGATCTTCTCTGAGGGCTTCCTCGGCCGAGAAAGCTCAGGTATGCCCTCCTTGTTGGATACCCGGGA
AGCCCTGGTCCAGTATATCACCATGGTGATATTCACCTGCTCAGCCAAGCATGCAGCTGTCAGTTCAGGC
CAGTTCGACTCTTGTGTTTGGATGCCCAATCTGCCACCTACCATGCAGCTACCACCACCTACTTCCAAAG
GCCAGGCCCGGCCTGAGAGTTTCATAGCCACGCTCCCAGCAGTTAATTCGTCAAGTTATCACATCATTGC
TCTCTGGCTGCTAAGCGCAGAACCTGGGGACCAAAGGCCCCTGGGCCACTATCCAGATGAACACTTCACA
GAGGATGCCCCCCGGCGAAGCGTGGCTGCCTTCCAGAGAAAGCTGATCCAGATCTCCAAGGGCATCAGGG
AGAGGAACCGAGGCCTGGCACTGCCCTACACCTACCTGGATCCTCCCCTCATTGAGAACAGTGTCTCCAT
CTAA

Translation (677 aa):
MAKCRVRVSTGEACGAGTWDKVSVSIVGTHGESPLVPLDHLGKEFSAGAEEDFEVTLPQDVGTVLMLRVH
KAPPEVSLPLMSFRSDAWFCRWFELEWLPGAALHFPCYQWLEGAGELVLREGAAKVSWQDHHPTLQDQRQ
KELESRQKMYSWKTYIEGWPRCLDHETVKDLDLNIKYSAMKNAKLFFKAHSAYTELKVKGLLDRTGLWRS
LREMRRLFNFRKTPAAEYVFAHWQEDAFFASQFLNGINPVLIRRCHSLPNNFPVTDEMVAPVLGPGTSLQ
AELEKGSLFLVDHGILSGVHTNILNGKPQFSAAPMTLLHQSSGSGPLLPIAIQLKQTPGPDNPIFLPSDD
TWDWLLAKTWVRNSEFYIHEAVTHLLHAHLIPEVFALATLRQLPRCHPLFKLLIPHIRYTLHINTLAREL
LVAPGKLIDKSTGLGTGGFSDLIKRNMEQLNYSVLCLPEDIRARGVEDIPGYYYRDDGMQIWGAIKSFVS
EIVSIYYPSDTSVQDDQELQAWVREIFSEGFLGRESSGMPSLLDTREALVQYITMVIFTCSAKHAAVSSG
QFDSCVWMPNLPPTMQLPPPTSKGQARPESFIATLPAVNSSSYHIIALWLLSAEPGDQRPLGHYPDEHFT
EDAPRRSVAAFQRKLIQISKGIRERNRGLALPYTYLDPPLIENSVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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