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Report for CCDS28675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28675.1 Public Mus musculus 17 Clic1 23 108 98 CCDS HistoryNCBI Gene:114584Re-query CCDS DB by CCDS ID:28675.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007257.9 ENSMUSP00000007257.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007257.9Link to Ensembl Protein Viewer:ENSMUSP00000007257.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000007257Re-query CCDS DB by Protein ID:ENSMUSP00000007257
Original member Current member NCBI NM_033444.2 NP_254279.1 Accepted alive Link to Nucleotide Sequence:NM_033444.2Link to Protein Sequence:NP_254279.1Re-query CCDS DB by Nucleotide ID:NM_033444Re-query CCDS DB by Protein ID:NP_254279Link to BLAST:NP_254279.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_254279.1 241 Q9Z1Q5 241 100% 0 0

Chromosomal Locations for CCDS 28675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35050448 35050486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35052435 35052544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35052781 35052906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35053033 35053139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35055227 35055408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35058330 35058491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGGCTGAAGAACAACCTCAGGTCGAACTGTTCGTGAAGGCTGGCAGTGATGGTGCCAAGATTGGGAACT
GCCCCTTCTCCCAGAGACTGTTCATGGTGCTCTGGCTCAAGGGAGTCACCTTCAACGTTACCACTGTGGA
CACCAAGAGACGGACAGAGACTGTACAGAAGCTCTGCCCCGGTGGGCAGCTGCCGTTCTTGCTCTATGGC
ACCGAAGTGCACACAGACACCAACAAGATCGAGGAATTCCTGGAGGCCATGCTGTGCCCTCCCAGGTACC
CAAAGCTGGCTGCCCTGAACCCTGAGTCCAACACCTCGGGACTGGACATATTTGCAAAGTTTTCTGCCTA
CATCAAGAACTCAAACCCAGCCCTCAATGACAACCTAGAGAAGGGACTCCTGAAAGCCCTGAAGGTTCTA
GACAATTACCTGACATCCCCCCTCCCAGAAGAAGTGGATGAAACCAGCGCCGAAGATGAGGGCATCTCTC
AGAGGAAGTTTCTGGACGGCAATGAGCTCACCCTGGCTGACTGCAACCTGCTGCCAAAGCTTCACATAGT
ACAGGTGGTGTGCAAAAAGTACAGAGGCTTCACCATCCCAGAGGCATTCCGTGGAGTGCATCGGTACTTG
AGCAACGCTTATGCCCGGGAAGAATTTGCCTCCACCTGTCCAGATGATGAAGAGATAGAGCTAGCCTATG
AGCAAGTGGCCAGGGCTCTCAAATGA

Translation (241 aa):
MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYG
TEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTSGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVL
DNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYL
SNAYAREEFASTCPDDEEIELAYEQVARALK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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