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Report for CCDS15189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15189.1 Public Mus musculus 1 Hdlbp 23 108 98 CCDS HistoryNCBI Gene:110611Re-query CCDS DB by CCDS ID:15189.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042498.13 ENSMUSP00000043047.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042498.13Link to Ensembl Protein Viewer:ENSMUSP00000043047.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042498Re-query CCDS DB by Protein ID:ENSMUSP00000043047
Original member Current member EBI ENSMUST00000170883.7 ENSMUSP00000127903.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170883.7Link to Ensembl Protein Viewer:ENSMUSP00000127903.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170883Re-query CCDS DB by Protein ID:ENSMUSP00000127903
Original member Current member NCBI NM_001301364.1 NP_001288293.1 Accepted alive Link to Nucleotide Sequence:NM_001301364.1Link to Protein Sequence:NP_001288293.1Re-query CCDS DB by Nucleotide ID:NM_001301364Re-query CCDS DB by Protein ID:NP_001288293Link to BLAST:NP_001288293.1
Original member Current member NCBI NM_001357556.1 NP_001344485.1 Accepted alive Link to Nucleotide Sequence:NM_001357556.1Link to Protein Sequence:NP_001344485.1Re-query CCDS DB by Nucleotide ID:NM_001357556Re-query CCDS DB by Protein ID:NP_001344485Link to BLAST:NP_001344485.1
Original member Current member NCBI NM_133808.5 NP_598569.1 Accepted alive Link to Nucleotide Sequence:NM_133808.5Link to Protein Sequence:NP_598569.1Re-query CCDS DB by Nucleotide ID:NM_133808Re-query CCDS DB by Protein ID:NP_598569Link to BLAST:NP_598569.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288293.1 1268 Q8VDJ3 1268 100% 0 0
NP_001344485.1 1268 Q8VDJ3 1268 100% 0 0
NP_598569.1 1268 Q8VDJ3 1268 100% 0 0

Chromosomal Locations for CCDS 15189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93408173 93408259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93408369 93408497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93408689 93408805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93408951 93409136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93412363 93412506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93413491 93413625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93413827 93413931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93414812 93414966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93416501 93416639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93417172 93417390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93417468 93417689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93420069 93420287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93421084 93421215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93421343 93421429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93423264 93423377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93423770 93423874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93425267 93425406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93427558 93427636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93428148 93428252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93429378 93429485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93430098 93430304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93430955 93431170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93431312 93431518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93437094 93437309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93438226 93438383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93440680 93440755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3807 nt):
ATGAGCTCCGTTGCAGTTTTGACCCAAGAGAGTTTTGCTGAACATCGAAGTGGGCTGGTTCCACAACAAA
TCAAAGTTGCCACCTTAAATTCAGAAGAGGAAAATGACCCTCCAACCTACAAGGATGCCTTCCCTCCACT
TCCTGAGAAAGCAGCTTGCTTGGAGAGTGCCCAAGAACCTGCCGGAGCCTGGAGTAACAAGATCCGGCCC
ATCAAGGCCTCTGTCATCACTCAGGTGTTTCATGTACCCCTGGAAGAGAGAAAATATAAGGACATGAACC
AGTTTGGAGAGGGTGAACAAGCAAAAATCTGCCTTGAGATCATGCAGAGGACTGGTGCTCACCTGGAACT
CTCTCTGGCTAAAGATCAAGGTCTCTCCATCATGGTCTCAGGGAAGCTGGATGCCGTCATGAAAGCCCGC
AAAGACATTGTTGCTAGACTACAGACACAGGCCTCAGCAACTGTTCCCATTCCTAAAGAGCACCATCGCT
TTGTTATTGGCAAAAACGGAGAGAAACTGCAAGACTTAGAACTAAAAACTGCAACCAAAATCCAGATCCC
ACGCCCAGATGACCCCAGTAATCAGATCAAGATCACTGGCACCAAAGAAGGCATCGAGAAAGCTCGCCAT
GAAGTCCTCCTAATCTCTGCTGAGCAGGACAAGCGTGCTGTAGAGAGGCTAGAAGTGGAGAAGGCTTTCC
ACCCCTTCATCGCTGGGCCGTACAACAGACTTGTGGGTGAAATCATGCAGGAGACAGGGACGCGAATCAA
CATCCCTCCACCCAGTGTTAACCGTACAGAAATCGTCTTCACTGGAGAGAAGGAGCAGCTGGCTCAGGCT
GTGGCTCGCATTAAGAAGATTTATGAGGAAAAGAAGAAGAAGACTACAACCATTGCGGTAGAGGTGAAGA
AGTCTCAGCACAAGTATGTTATTGGGCCAAAGGGCAATTCACTGCAAGAAATCCTGGAAAGAACTGGAGT
TTCTGTTGAGATCCCACCCTCCGACAGCATCTCTGAGACTGTGATACTTAGAGGCGAACCTGAAAAGTTG
GGACAGGCGTTGACTGAAGTCTATGCCAAGGCCAACAGTTTTACAGTCTCCTCAGTCTCTGCCCCTTCCT
GGCTTCATCGTTTCATCATTGGTAAGAAAGGGCAGAACCTGGCCAAAATCACTCAGCAAATGCCAAAGGT
TCACATTGAGTTCACAGAAGGTGAGGACAAGATCACCCTGGAGGGCCCCACAGAGGATGTGAATGTAGCC
CAAGAACAGATTGAAGGAATGGTCAAAGACCTGATTAATAGGATGGACTATGTAGAGATCAACATTGACC
ATAAATTCCACAGACACCTCATTGGAAAGAGCGGAGCCAACATCAACAGAATCAAAGACCAGTACAAAGT
GTCTGTGCGCATCCCCCCTGACAGTGAAAAGAGTAACCTGATCCGAATTGAGGGAGACCCACAGGGTGTT
CAGCAGGCCAAGCGGGAGCTGCTGGAGCTTGCTTCTCGCATGGAAAATGAGCGCACCAAGGATCTAATCA
TCGAGCAAAGATTTCATCGCACAATCATTGGGCAGAAAGGTGAACGGATTCGAGAAATTCGTGACAAATT
CCCAGAGGTTATCATCAACTTTCCAGACCCAGCACAAAAAAGTGATATTGTACAACTCAGAGGCCCCAAG
AATGAGGTGGAGAAGTGCACTAAGTATATGCAGAAGATGGTCGCAGACCTGGTGGAAAATAGCTATTCAA
TTTCTGTACCAATCTTCAAACAGTTTCACAAGAATATCATCGGGAAAGGAGGCGCAAACATTAAAAAGAT
CCGTGAAGAGAGCAACACCAAGATTGACCTTCCTGCAGAGAACAGCAACTCTGAGACCATTATTATCACT
GGCAAGCGAGCCAACTGTGAAGCTGCCCGCAGCCGGATTCTGTCTATCCAGAAAGATCTGGCCAACATAG
CTGAAGTGGAGGTCTCAATTCCTGCCAAACTACACAACTCTCTCATTGGCACAAAGGGCCGTCTGATCCG
CTCCATCATGGAGGAATGTGGTGGCGTCCATATTCACTTTCCTGTGGAAGGTTCTGGAAGCGACACTGTT
GTCATCAGGGGTCCTTCCTCAGATGTAGAGAAGGCCAAGAAGCAGCTCCTGCACCTGGCTGAGGAGAAGC
AAACCAAGAGTTTTACTGTGGACATCCGAGCCAAGCCAGAATACCACAAATTCCTCATTGGCAAAGGGGG
AGGTAAAATCCGAAAGGTGCGTGACAGTACTGGAGCCCGCATCATATTTCCGGCTGCTGAAGATAAGGAC
CAGGACCTGATCACAATCATAGGAAAGGAGGATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGCATTGA
TCCAGAACCTGGAGAATGTGGTTGAAGACTATATGCTGGTGGACCCCAAACACCACCGCCATTTTGTCAT
CCGAAGAGGACAAGTTTTACGAGAAATTGCTGAAGAGTATGGCGGGGTGATGGTCAGCTTCCCACGCTCT
GGCACGCAGAGTGATAAAGTCACTCTCAAGGGTGCCAAGGACTGTGTGGAGGCAGCCAAGAAACGCATTC
AGGAAATCATTGAGGATCTGGAAGCTCAAGTGACAGTGGAATGTGCTATACCCCAGAAGTTTCACCGATC
GGTCATGGGTCCCAAAGGTTCAAGAATCCAGCAGATCACTCGGGACTACAATGTTCAAATCAAGTTCCCA
GATAGAGAGGAAAATCCAGTTCACAGTGTAGAGCCTTCCATCCAGGAGAATGGAGATGAGGCTGGAGAGG
GCAGAGAGGCCAAGGAGACCGACCCTGGCTCTCCCAGGAGGTGTGACATCATAATCATCTCTGGCCGGAA
AGAGAAATGCGAGGCTGCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGGTACCC
TTTGATCTTCACCGCTACATCATTGGGCAAAAAGGAAGTGGAATCCGCAAGATGATGGATGAGTTTGAGG
TGAACATCCATGTACCAGCCCCCGAGCTGCAGTCAGACACCATCGCCATCACTGGCCTTGCAGCAAATTT
GGACAGGGCTAAGGCGGGGCTACTGGATCGAGTAAAGGAGCTGCAGGCTGAGCAGGAAGATCGGGCTTTA
AGGAGTTTTAAGCTGAGTGTCACTGTAGACCCCAAATACCATCCCAAAATTATCGGGAGAAAAGGAGCAG
TGATCACCCAGATCCGCTTGGAACATGAAGTGAACATCCAATTTCCTGATAAGGATGATGGGAACCAGCC
CCAGGACCAAATCACCATCACAGGGTATGAGAAGAACACTGAAGCTGCCCGTGATGCTATCCTGAAAATT
GTGGGTGAGCTTGAGCAGATGGTTTCTGAGGATGTTCCACTGGATCACCGTGTGCACGCTCGAATCATTG
GTGCCCGGGGCAAAGCCATCCGGAAAATAATGGATGAATTCAAGGTGGACATTCGCTTCCCACAGAGTGG
AGCGCCAGACCCCAATTGCGTCACTGTGACAGGACTCCCAGAGAATGTGGAGGAAGCTATCGACCATATC
CTCAACCTAGAAGAGGAATATCTGGCAGATGTGGTGGACAGTGAGGCACTGCAAGTTTACATGAAGCCCC
CAGCACATGAAGAGTCCAGGGCACCATCCAAAGGCTTTGTGGTGCGAGATGCTCCCTGGACCTCCAACAG
CAGTGAGAAGGCTCCTGATATGAGCAGCTCTGAAGAATTTCCCAGCTTTGGGGCTCAAGTGGCCCCCAAG
ACCCTCCCTTGGGGCCCCAAACGATAA

Translation (1268 aa):
MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEENDPPTYKDAFPPLPEKAACLESAQEPAGAWSNKIRP
IKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKAR
KDIVARLQTQASATVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARH
EVLLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQA
VARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISETVILRGEPEKL
GQALTEVYAKANSFTVSSVSAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVNVA
QEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGV
QQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPK
NEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIIT
GKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTV
VIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARIIFPAAEDKD
QDLITIIGKEDAVREAQKELEALIQNLENVVEDYMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSFPRS
GTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTVECAIPQKFHRSVMGPKGSRIQQITRDYNVQIKFP
DREENPVHSVEPSIQENGDEAGEGREAKETDPGSPRRCDIIIISGRKEKCEAAKEALEALVPVTIEVEVP
FDLHRYIIGQKGSGIRKMMDEFEVNIHVPAPELQSDTIAITGLAANLDRAKAGLLDRVKELQAEQEDRAL
RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHEVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILKI
VGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHI
LNLEEEYLADVVDSEALQVYMKPPAHEESRAPSKGFVVRDAPWTSNSSEKAPDMSSSEEFPSFGAQVAPK
TLPWGPKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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