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Report for CCDS39596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39596.1 Public Mus musculus 6 Sec13 23 108 98 CCDS HistoryNCBI Gene:110379Re-query CCDS DB by CCDS ID:39596.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39596.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032440.5 ENSMUSP00000032440.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032440.5Link to Ensembl Protein Viewer:ENSMUSP00000032440.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032440Re-query CCDS DB by Protein ID:ENSMUSP00000032440
Original member Current member NCBI NM_024206.4 NP_077168.2 Accepted alive Link to Nucleotide Sequence:NM_024206.4Link to Protein Sequence:NP_077168.2Re-query CCDS DB by Nucleotide ID:NM_024206Re-query CCDS DB by Protein ID:NP_077168Link to BLAST:NP_077168.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077168.2 322 Q9D1M0 322 100% 0 0

Chromosomal Locations for CCDS 39596.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113728350 113728463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113729596 113729742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113730335 113730458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113730774 113730907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113734546 113734679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113735057 113735208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113736372 113736487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113737954 113737998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113740645 113740647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGTGTCAGTAATGAACACTGTGGACACCTCTCATGAGGACATGATTCATGATGCACAGATGGACTACT
ACGGCACCCGCCTAGCAACCTGCTCCTCGGATAGGTCCGTCAAAATTTTCGATGTGCGGAATGGAGGGCA
GATCCTCATCGCAGACCTCAGAGGACATGAGGGGCCAGTATGGCAAGTGGCCTGGGCCCACCCCATGTAT
GGCAATATCCTGGCCTCCTGTTCCTATGACCGGAAAGTCATCATCTGGAAGGAGGAAAACGGCACTTGGG
AGAAGACCCATGAGCACTCGGGACACGACTCCTCAGTGAACTCTGTTTGCTGGGCCCCTCATGACTATGG
CCTGATCCTGGCCTGTGGGAGTTCAGATGGGGCCATCTCACTGCTGACCTATACAGGGGAAGGCCAGTGG
GAAGTGAAGAAGATTAACAATGCTCACACGATTGGCTGTAATGCTGTCAGTTGGGCCCCAGCAGTTGTGC
CTGGAAGCCTTATAGACCAACCATCAGGGCAGAAACCCAATTACATCAAGAAGTTTGCATCAGGTGGCTG
TGACAACCTCATCAAGCTATGGAGGGAAGAGGAGGATGGCCAGTGGAAGGAGGAGCAGAAGCTAGAGGCA
CACAGCGACTGGGTCCGAGATGTTGCCTGGGCCCCCTCCATTGGCTTGCCCACCAGCACCATTGCCAGCT
GCTCTCAGGATGGTCGAGTGTTTATTTGGACCTGTGACGATGCCTCAGGCAATATGTGGTCACCTAAACT
CCTACACAAGTTCAATGATGTTGTGTGGCACGTGAGCTGGTCCATCACAGCCAACATCCTGGCTGTGTCA
GGTGGAGACAATAAGGTGACCCTGTGGAAAGAGTCGGTGGACGGACAGTGGGTGTGCATCAGTGACGTCA
ACAAGGGCCAGGGTTCTGTGTCAGCCTCCATCACAGAGGGCCAACAGAACGAGCAGTGA

Translation (322 aa):
MVSVMNTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY
GNILASCSYDRKVIIWKEENGTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW
EVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEEQKLEA
HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVS
GGDNKVTLWKESVDGQWVCISDVNKGQGSVSASITEGQQNEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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