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Report for CCDS40650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40650.1 Public Mus musculus 9 Mpi 23 108 98 CCDS HistoryNCBI Gene:110119Re-query CCDS DB by CCDS ID:40650.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034856.14 ENSMUSP00000034856.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034856.14Link to Ensembl Protein Viewer:ENSMUSP00000034856.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034856Re-query CCDS DB by Protein ID:ENSMUSP00000034856
Original member Current member NCBI NM_025837.2 NP_080113.1 Accepted alive Link to Nucleotide Sequence:NM_025837.2Link to Protein Sequence:NP_080113.1Re-query CCDS DB by Nucleotide ID:NM_025837Re-query CCDS DB by Protein ID:NP_080113Link to BLAST:NP_080113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080113.1 423 Q924M7 423 100% 0 0

Chromosomal Locations for CCDS 40650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57544720 57544938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57545195 57545403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57546394 57546567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57548528 57548710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57549037 57549178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57550573 57550773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57552147 57552274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57552704 57552719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGCGAGTCCGCGAGTGTTCCCACTTTCCTGTGTGGTGCAGCAGTATGCCTGGGGGAAGGTGGGCTCCA
AAAGTGAAGTGGCATGCCTGCTGGCTAGCAGTGATCCACTGGCCCAGATTTCAGAGGACAAGCCATATGC
AGAGCTGTGGATGGGGACACACCCCCGGGGAGATGCCAAGATCCTTGACAACCGTATTTCCCAGAAGACC
TTAGGCCAGTGGATTGCTGAAAACCCGGACTGCTTGGGCTCAAAGGTCAAAAACACCTTTAATGGAAAGC
TGCCCTTCCTCTTCAAAGTACTGTCAGTGGACACGGCCCTGTCTATCCAGGCACACCCTAACAAGGAGCT
GGCAGAGAAGCTGCATCTCCAGGCTCCAGAGCACTACCCTGATGCCAACCACAAGCCAGAAATGGCCATT
GCCCTTACCTCCTTCCAGGGCTTGTGTGGTTTCCGGCCAGTGGAGGAGATTGTGACCTTTATGAAGAAGG
TGCCTGAGTTCCAGTTGCTGATTGGAGATGATGCCACAGCACAGCTGAAGGAGAGCGTGGGTGGGGATAC
TGAGGCCATGGCTTCTGCTCTGAGGAACTGCTTTTCCCACCTGATGAAGAGTGAGAAGAAGGTGGTGGTG
GAGCAGCTTAACCTGTTGGTGAAACGGATCTCCCAGCAAGTATTTGACGGAAACAATATGGAGGACATTT
ATGGGAAGCTCTTGCTGCAGCTGCACCAACAGCACCCAGGTGATATCGGATGTTTCGCCATCTACTTCCT
GAACCTGCTCACCTTGAAGCCTGGGGAAGCCATGTTTCTGGATGCCAACGTACCCCATGCCTACCTGAAG
GGAGACTGCGTGGAATGCATGGCATGTTCGGACAATACCGTGCGTGCTGGCCTGACACCCAAATTCATTG
ATGTGCCAACCCTGTGTGAAATGCTCAACTACACACCTAGCCCCAGCAACAACAGGCTGTTTGCCCCAGC
ACAGAGTCAAGATGACCCCTATCTCTCTATCTATGATCCTCCTGTGCCAGACTTCACTGTTATGAAGATG
GAGGTCCCTAGCTCTGTCACTGAATACAAAGTCTCAACACTAGACTCTGCCAGCATCCTTCTGATGGTCC
AAGGGACAGTGACAGCTATCATACCTTCAGCCCATGCAGAAATCCCTCTGTACCGTGGTGGAGTGCTCTT
CATTGCAGCCAATGAGAGTGTCTTACTGAAGATTACTGTGCCCAAGGATCTGCTGATATTCCGGGCCTGC
TGTCTGCTGTAG

Translation (423 aa):
MASPRVFPLSCVVQQYAWGKVGSKSEVACLLASSDPLAQISEDKPYAELWMGTHPRGDAKILDNRISQKT
LGQWIAENPDCLGSKVKNTFNGKLPFLFKVLSVDTALSIQAHPNKELAEKLHLQAPEHYPDANHKPEMAI
ALTSFQGLCGFRPVEEIVTFMKKVPEFQLLIGDDATAQLKESVGGDTEAMASALRNCFSHLMKSEKKVVV
EQLNLLVKRISQQVFDGNNMEDIYGKLLLQLHQQHPGDIGCFAIYFLNLLTLKPGEAMFLDANVPHAYLK
GDCVECMACSDNTVRAGLTPKFIDVPTLCEMLNYTPSPSNNRLFAPAQSQDDPYLSIYDPPVPDFTVMKM
EVPSSVTEYKVSTLDSASILLMVQGTVTAIIPSAHAEIPLYRGGVLFIAANESVLLKITVPKDLLIFRAC
CLL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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