NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16862.1 Public Mus musculus 2 Pygb 23 108 98 CCDS HistoryNCBI Gene:110078Re-query CCDS DB by CCDS ID:16862.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045441.7 ENSMUSP00000035743.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045441.7Link to Ensembl Protein Viewer:ENSMUSP00000035743.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045441Re-query CCDS DB by Protein ID:ENSMUSP00000035743
Original member Current member NCBI NM_153781.1 NP_722476.1 Accepted alive Link to Nucleotide Sequence:NM_153781.1Link to Protein Sequence:NP_722476.1Re-query CCDS DB by Nucleotide ID:NM_153781Re-query CCDS DB by Protein ID:NP_722476Link to BLAST:NP_722476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722476.1 843 Q8CI94 843 100% 0 0

Chromosomal Locations for CCDS 16862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 150786868 150787110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150801538 150801639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150806193 150806271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150808797 150808900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150811254 150811385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150813391 150813502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150813921 150814003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150814986 150815129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150815618 150815710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150816750 150816896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150817638 150817801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150818846 150818960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150819874 150819975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150820735 150820882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150823976 150824034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150826329 150826470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150827105 150827312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150828444 150828578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150829628 150829694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150830362 150830514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2532 nt):
ATGGCGAAGCCGTTGACGGACAGTGAGAGGCAGAAGCAGATCAGCGTGCGTGGCATCGCGGGGCTGGGCG
ACGTGGCCGAGGTGCGGAAGAGCTTCAACAGACACCTGCATTTCACGCTGGTCAAGGACCGCAATGTGGC
CACGCCCCGCGACTACTTCTTCGCTCTGGCACACACAGTTCGCGACCACCTAGTGGGCCGCTGGATCCGC
ACGCAGCAGCATTACTATGAGCGGGACCCCAAGCGCATCTATTACCTTTCCCTGGAATTCTACATGGGCC
GCACGCTGCAGAATACCATGGTGAACCTGGGCCTTCAGACTGCATGCGACGAAGCCACTTATCAGTTGGG
GTTGGACTTGGAAGAGCTAGAGGAGATAGAGGAGGATGCTGGTCTTGGGAATGGCGGCCTGGGGCGCCTG
GCAGCCTGCTTCCTTGATTCAATGGCCACCCTGGGTCTGGCTGCATACGGCTATGGAATCCGATATGAAT
TTGGGATTTTCAACCAAAAGATTGTCAATGGCTGGCAGGTTGAAGAAGCTGATGACTGGCTACGCTATGG
AAACCCCTGGGAGAAGGCACGGCCGGAGTACATGCTGCCGGTGCATTTCTACGGGAGGGTGGAGCACACC
CCTGACGGGGTCCTCTGGCTGGACACGCAGGTGGTACTCGCTATGCCCTACGACACCCCAGTGCCTGGGT
ATAAGAACAACACAGTCAACACCATGAGGCTCTGGTCTGCCAAGGCACCCAATGACTTCAAGCTGAAGGA
CTTCAACGTTGGGGACTACATCGAAGCTGTCCTGGATAGGAACTTGGCTGAGAACATCTCCAGGGTCCTG
TATCCCAATGACAATTTCTTCGAGGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCA
CCCTCCAGGACATCATTCGAAGGTTCAAGTCTTCCAGGTTTGGCTGCCGGGACCCAGTGAGAACCTGTTT
CGAGACATTCCCAGACAAGGTAGCCATCCAGCTGAATGACACCCACCCCGCGCTCTCCATCCCTGAGCTC
ATGCGGATCCTGGTGGACGTGGAGAAGGTGGACTGGGATAAGGCCTGGGAGATCACCAAGAAGACCTGTG
CCTACACCAACCACACGGTGCTGCCCGAGGCCCTGGAGCGCTGGCCAGTGTCTATGTTTGAGAAGCTGCT
TCCGCGGCACCTGGAAATAATCTATGCCATCAACCAGAGGCACTTGGACCACGTGGCTGCCCTGTTTCCT
GGGGACGTGGACCGACTGAGGAGGATGTCCGTGATTGAGGAAGGGGACTGCAAGAGAATCAACATGGCAC
ACCTGTGTGTGATTGGGTCCCACGCTGTGAACGGGGTGGCAAGGATTCACTCTGAGATCGTGAAGCAGTC
TGTCTTTAAGGACTTTTACGAACTGGAGCCAGAGAAGTTCCAGAACAAGACAAATGGCATCACGCCCCGA
CGGTGGCTGCTGTTGTGTAACCCGGGGCTGGCAGAAATCATTGTAGAGAGAATCGGGGAAGGTTTCCTGA
CCGATCTGAGCCAACTGAAGAAGCTGCTGTCACTGGTTGATGATGAGGCCTTCATCAGAGACGTAGCCAA
GGTTAAGCAGGAAAACAAGCTGAAGTTCTCTGCCCAGCTAGAGAAGGAGTACAAGGTGAAGATCAACCCT
GCATCCATGTTTGATGTGCACGTGAAGAGGATCCACGAATATAAGCGACAGCTGCTCAACTGCCTACACA
TTATCACCCTGTACAACCGAATAAAGAAGGATCCAGCCAAGGCCTTTGTGCCCAGGACTGTTATGATTGG
GGGCAAGGCAGCTCCTGGTTACCACATGGCTAAGATGATCATCAAGCTGGTCACATCCATTGGAGATGTT
GTCAATCATGATCCAGTTGTGGGCGACAGGCTCAGAGTGATCTTCCTGGAGAACTACCGTGTGTCTTTAG
CTGAGAAAGTGATCCCAGCGGCTGACCTGTCCCAGCAGATCTCCACTGCGGGCACTGAAGCCTCGGGCAC
AGGCAACATGAAGTTCATGCTCAATGGAGCGCTCACCATCGGCACCATGGATGGTGCCAACGTGGAGATG
GCCGAGGAGGCCGGGGAGGAGAACCTCTTCATCTTTGGTATGCGGGTGGAAGATGTCGAGGCCCTGGACC
AGAAAGGGTACAATGCCAGAGAATTCTATGAGCGCCTGCCTGAGCTGAGGCAGGCTGTGGATCAGATCAG
CAGTGGCTTCTTTTCTCCCAAAGATCCAGACTGCTTCAAGGACGTGGTTAACATGCTGATGTACCACGAC
AGATTCAAGGTATTTGCAGACTATGAAGCCTACATCCAATGCCAGGCCCAGGTGGACCGTCTATACCGGA
ATTCCAAGGAGTGGACTAAAAAGGTGATCAGGAATATAGCCTGCTCTGGCAAGTTCTCCAGTGACCGGAC
CATCACTGAATACGCCCGGGAGATCTGGGGTGTGGAGCCCTCTGACCTGCAGATCCCACCCCCCAACCTC
CCCAAGGACTAA

Translation (843 aa):
MAKPLTDSERQKQISVRGIAGLGDVAEVRKSFNRHLHFTLVKDRNVATPRDYFFALAHTVRDHLVGRWIR
TQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQTACDEATYQLGLDLEELEEIEEDAGLGNGGLGRL
AACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYMLPVHFYGRVEHT
PDGVLWLDTQVVLAMPYDTPVPGYKNNTVNTMRLWSAKAPNDFKLKDFNVGDYIEAVLDRNLAENISRVL
YPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSRFGCRDPVRTCFETFPDKVAIQLNDTHPALSIPEL
MRILVDVEKVDWDKAWEITKKTCAYTNHTVLPEALERWPVSMFEKLLPRHLEIIYAINQRHLDHVAALFP
GDVDRLRRMSVIEEGDCKRINMAHLCVIGSHAVNGVARIHSEIVKQSVFKDFYELEPEKFQNKTNGITPR
RWLLLCNPGLAEIIVERIGEGFLTDLSQLKKLLSLVDDEAFIRDVAKVKQENKLKFSAQLEKEYKVKINP
ASMFDVHVKRIHEYKRQLLNCLHIITLYNRIKKDPAKAFVPRTVMIGGKAAPGYHMAKMIIKLVTSIGDV
VNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEM
AEEAGEENLFIFGMRVEDVEALDQKGYNAREFYERLPELRQAVDQISSGFFSPKDPDCFKDVVNMLMYHD
RFKVFADYEAYIQCQAQVDRLYRNSKEWTKKVIRNIACSGKFSSDRTITEYAREIWGVEPSDLQIPPPNL
PKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH