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Report for CCDS25948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25948.1 Public Mus musculus 12 Dnaaf2 23 108 98 CCDS HistoryNCBI Gene:109065Re-query CCDS DB by CCDS ID:25948.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021356.5 ENSMUSP00000021356.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021356.5Link to Ensembl Protein Viewer:ENSMUSP00000021356.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021356Re-query CCDS DB by Protein ID:ENSMUSP00000021356
Original member Current member NCBI NM_027269.4 NP_081545.3 Accepted alive Link to Nucleotide Sequence:NM_027269.4Link to Protein Sequence:NP_081545.3Re-query CCDS DB by Nucleotide ID:NM_027269Re-query CCDS DB by Protein ID:NP_081545Link to BLAST:NP_081545.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081545.3 814 Q8BPI1-1 814 100% 0 0

Chromosomal Locations for CCDS 25948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69189888 69190394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69192808 69192951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69196492 69198285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2445 nt):
ATGGCCAAGGCGGCGGCCTCCTCAGCGCTGGAGGACTTGGATCTGAGCAGAGAGGAGGTGCAGCGGTTCA
CCTCCGCCTTTCAGGACCCAGAGTTCCGCCGAATGTTCTCCGAGTACGCCGCGGAGATCACGGACCCCGA
GAACCGGAGGCGCTACGAGGAGGAGATCACAGCCCTGGAGCGGGAGCGTGGGGTGGATGTGCGGTTCGTG
CACCCTGAGCCGGGCCATGTGCTGCGTACCAGCCTGGACGGGGAGCACCGCTGCTACGTGAACGTGTGCA
GCAACTCACTGGTAGGCGTACCTAGCAGCCGGCCCGGCCCGGGGCGCGGCGGCACGGCAGCTGGCAGCCA
CTGGTCCCTGCCCTATAGCCTGGCTCCCGGCCGCCAGTATGCCGGCCGCAACGGCGCCCGCTACACCGTC
TACGACGTGGTCTTCCACCCCGAAGCGCTGGCGCTGGCCCGGAGCCACGAGCGCTTCCGCGAAATGCTGG
ACGCCACGGCCCTGGAGGCGGTGGAGCAGCAGTTCGGCGTCAGGCTGGACCGCAGGAACGCCAAGACCCT
GAAGATCAAGTACAAGGGGATGCCCGAGGCCGCAGTGCTCCGCACGCCCCTACCCGGGGGCGTCCCGGCC
CAGCCCGAGGGGGAGCCACCAGGGCTTTTCCCGGACCCACCATATCCATACCGCTACCCCGCGGCAGCGG
CGGCGAACACTGCCCGCTCGCCCGCGTCCCCCGCTCCCGAGGCCGTGCAGCGCCCAGAGCCCACGGAGCC
GCGCTGCTCCGTGGTGCAGCGCCACCACGTAGACCTCCAGGATTACCGCTGCTCGCGCGACGCGGCCCCG
AGCACCGTGCCGCACGAGCTGGTGGTCACCATCGAGCTGCCGCTGCTGCGCTCGGTCGAGCGGGCGGAGC
TGGAGGTGAAGGGGAAGCTGCTGTGCCTGGACTCGAGAAACCCCGACTACCGGCTGCGGCTCTCGCTGCC
GTACCCGGTGGACGACGGCCGCGGCAAGGCACAGTACAACAAGGCGCGGCGGCAGCTGGTGGTCACGCTG
CCGGTGGCGCTGGCCGACGCGCGCCAGGAACCCCCGGCCGCGACACCGGAAGAGCCCGCGGAGGAGACCG
GAACTGACGACGTAGCCCGCACTTCCGCGGGCGATTTTGCAGCGGCGCGGGAAGAGTCTGCAGATGGAAC
CGGAGCTGACCACGGGGAGAAGAGCGGTGTGGGAGCCCCAGACCCCGGGGCTGCACACGCTGAAGGGGAG
CTCGTTCCCGAACCGGAGCAGGACTTCGGAGGGGACTCGGTGGCACCTCTAGACCTCGGGAAAGGGACTT
CTCCTGGGGACCGAAGCCTCCCTTACTCTGCTTTCCCGGGCGGCGACACCGAATCCCTGTGCGGAGACCC
CGGTGTCCAGACGAATGAGGAGCAGGAGAGGACCCGCCACGACACCGCGGGCTCAGCCATGGGTGACCCC
GGAACCGAGAGCATCGCACCCGTGTGCCCTCCTTTACAGTGTAATCAGGACGAAGACTCCTTGACTTTGC
TCATCCAAGTGCCTGGGATTCTGCCACAAACTCTTCACGGACATCTAAGCCCCGTCGGTTACGAATTGTG
CTTCTCTACACAAGACTCGGGTTATTCCTGCACTTTGCAGTTTGCTCCAGAGAATAAGTTGAGTACCAGA
GAACCCGAGACTAGCGTTTCTTTAAATAATGCAGTCATAGTACTGGCAAAATCTCCAGAGAGCCACGGAC
TTTGGCGAGAGTGGTATTGTGGCTTGAACAAGGAGTCTTTGGAGGAAAGATTGTTTATCAATGAAGAAAA
TGTTAATGGGTTTCTTGAAGAGGTCCTTTGCTCCCCATTGAAGCAGGCAAGGTCTCTGGCCCCACCGCTG
ATTGAGGTTCTTCAGGCCACTGATGAGCAGGTTCAGATCCATGCAGAGTTGCAGGAATGTAGTGATCCTG
CTGGGCTTCAAGGAAAGGGAAAAGGAGTCAGAGAAGGCTGTCCTCTGAGTGAAGCAGAAGCCGCTGACCA
GTCCGCCACCTCTCCAGCTGCTTCTGATTCAGCTGCAGCAGTCGAAGCACTAAAAATAAACACGCATGGT
TCAGCTGTGGACCTGCAACACGGCTGTCCTGAGGTTCCTCACGTACTGTCTGGAAAACCGCTGCAACCAG
AGGCAAAAATGGATCCTGAGTTTATAAGAGAAAGTAGTACTACCTACTCGACTGAGGAAAAGGAAAATAT
AAGAGAGCCAGTAATAAGCAAGGGGGAAAAAATAAATGGAGATCACCCATCTTCATTACTGAACAAAACT
GTGGTTCAAAACATACCTGACTTTGACACTATAAAAGAGACGAATATGCAGGATGGTAGTGTGCAGATTA
TTAGAGACCACACGACTCATTGTGCATTCAGTTTTCAGAATCCCTTGCTATATGATTTAGACTGA

Translation (814 aa):
MAKAAASSALEDLDLSREEVQRFTSAFQDPEFRRMFSEYAAEITDPENRRRYEEEITALERERGVDVRFV
HPEPGHVLRTSLDGEHRCYVNVCSNSLVGVPSSRPGPGRGGTAAGSHWSLPYSLAPGRQYAGRNGARYTV
YDVVFHPEALALARSHERFREMLDATALEAVEQQFGVRLDRRNAKTLKIKYKGMPEAAVLRTPLPGGVPA
QPEGEPPGLFPDPPYPYRYPAAAAANTARSPASPAPEAVQRPEPTEPRCSVVQRHHVDLQDYRCSRDAAP
STVPHELVVTIELPLLRSVERAELEVKGKLLCLDSRNPDYRLRLSLPYPVDDGRGKAQYNKARRQLVVTL
PVALADARQEPPAATPEEPAEETGTDDVARTSAGDFAAAREESADGTGADHGEKSGVGAPDPGAAHAEGE
LVPEPEQDFGGDSVAPLDLGKGTSPGDRSLPYSAFPGGDTESLCGDPGVQTNEEQERTRHDTAGSAMGDP
GTESIAPVCPPLQCNQDEDSLTLLIQVPGILPQTLHGHLSPVGYELCFSTQDSGYSCTLQFAPENKLSTR
EPETSVSLNNAVIVLAKSPESHGLWREWYCGLNKESLEERLFINEENVNGFLEEVLCSPLKQARSLAPPL
IEVLQATDEQVQIHAELQECSDPAGLQGKGKGVREGCPLSEAEAADQSATSPAASDSAAAVEALKINTHG
SAVDLQHGCPEVPHVLSGKPLQPEAKMDPEFIRESSTTYSTEEKENIREPVISKGEKINGDHPSSLLNKT
VVQNIPDFDTIKETNMQDGSVQIIRDHTTHCAFSFQNPLLYDLD


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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