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Report for CCDS52286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52286.1 Public Mus musculus 7 Mex3b 23 108 98 CCDS HistoryNCBI Gene:108797Re-query CCDS DB by CCDS ID:52286.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082237.6 ENSMUSP00000082168.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082237.6Link to Ensembl Protein Viewer:ENSMUSP00000082168.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000082237Re-query CCDS DB by Protein ID:ENSMUSP00000082168
Original member Current member NCBI NM_175366.3 NP_780575.2 Accepted alive Link to Nucleotide Sequence:NM_175366.3Link to Protein Sequence:NP_780575.2Re-query CCDS DB by Nucleotide ID:NM_175366Re-query CCDS DB by Protein ID:NP_780575Link to BLAST:NP_780575.2

Chromosomal Locations for CCDS 52286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 82867651 82867927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82868756 82870209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGCCCAGCTCGCTGTTTGCAGACCTGGAGCGCAACGGCAGCGGCGGCGGCGGGGGAGGCGGCGGCGGGG
GAGGCGGCGGTGGCAGCGGCGGGGGAGAGACTCTGGATGACCAAAGAGCCCTGCAGCTTGCGCTCGATCA
GCTCTCCCTGTTGGGACTGGACAGTGATGAGGGCGCCTCTTTGTACGACAGCGAACCGCGCAAGAAGAGC
GTGAACATGACCGAGTGCGTGCCGGTACCCAGTTCCGAACACGTCGCGGAGATCGTAGGGAGGCAAGGTT
GTAAAATCAAAGCTTTGAGGGCGAAGACCAACACTTACATCAAGACCCCAGTTCGCGGGGAGGAGCCTGT
CTTTGTTGTGACGGGCAGGAAGGAGGATGTGGCTATGGCTCGGAGGGAGATCATCTCTGCCGCAGAGCAC
TTCTCCATGATCCGAGCCTCTCGTAACAAGAACACGGCTCTCAACGGAGCTGTGCCCGGACCGCCCAACC
TGCCGGGACAGACCACTATCCAAGTGAGGGTGCCATACCGCGTGGTAGGGCTCGTGGTGGGTCCAAAGGG
CGCCACGATCAAGCGCATTCAACAGCAGACACATACATATATTGTGACACCCAGCCGAGACAAGGAGCCA
GTTTTCGAGGTGACTGGCATGCCAGAGAACGTGGATCGCGCTAGAGAGGAGATCGAAGCTCACATCGCGC
TGCGCACCGGTGGCATCATCGAGCTGACAGACGAGAACGACTTCCATGCCAATGGCACAGACGTGGGCTT
TGATCTGCATCACGGGTCCGGCGGGTCCGGGCCGGGCAGCCTCTGGAGCAAGCCCACCCCAAGCATCACT
CCTACACCTGGCCGCAAGCCCTTCTCCAGCTATCGCAACGACAGCTCCAGCTCGCTTGGCAGCGCATCCA
CAGACTCTTACTTCGGTGGTGGGACCAGCGGCAGCGCAGCTGCTACTTCACGCCTGGCGGACTATAGCCC
TCCCAGCCCTGCACTCAGCTTTGCTCACAATGGGAACAACAACAATAACGGCAATGGTTACACCTACACA
GCGGGGGAAGCCTCAGTACCTTCCCCAGATGGGGGTCCTGAGCTGCAGCCTACTTTCGACCCAGCTCCCG
CCCCACCACCTGGGACACCCCTTCTCTGGGCCCAGTTCGAGCGCTCTCCAGGAGGTGGATCTGCAGCACC
AGTATCCTCTTCCTGCTCTTCTTCGGCATCCTCATCTGCCTCGTCGTCCTCTGTGGTCTTTCCCGGGGGT
GGCGCCAGCAGCACACCCTCCAATGCCAATCTGGGGCTGCTGGTGCACCGTCGACTGCACCCGGGCACCA
GCTGCCCGCGCCTGTCTCCGCCCTTGCACATGGCCACGGGGGCGGGAGAGCACCACCTTGCTCGCCGCGT
GCGCAGCGACCCGGGCGGTGGAGGCCTGGCCTACGCTGCCTATGCTAATGGGCTAGGGACGCAGCTCCCT
GGCCTGCCCTCGTCGGACACTTCGGGCTCCTCCTCGTCCTCTAGCTCCTCCTCCAGCTCTTCCTCCTCTT
CCTCTGGGCTGAGGCGCAAAGGCAGCCGCGACTGCTCTGTGTGCTTCGAGAGTGAAGTGATCGCCGCGCT
GGTGCCCTGTGGCCACAACCTCTTCTGCATGGAGTGTGCCAACCGCATTTGTGAGAAGAGCGAGCCCGAG
TGTCCCGTCTGCCACACGGCGGTCACTCAGGCCATCCGCATTTTTTCCTGA

Translation (576 aa):
MPSSLFADLERNGSGGGGGGGGGGGGGGSGGGETLDDQRALQLALDQLSLLGLDSDEGASLYDSEPRKKS
VNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEH
FSMIRASRNKNTALNGAVPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEP
VFEVTGMPENVDRAREEIEAHIALRTGGIIELTDENDFHANGTDVGFDLHHGSGGSGPGSLWSKPTPSIT
PTPGRKPFSSYRNDSSSSLGSASTDSYFGGGTSGSAAATSRLADYSPPSPALSFAHNGNNNNNGNGYTYT
AGEASVPSPDGGPELQPTFDPAPAPPPGTPLLWAQFERSPGGGSAAPVSSSCSSSASSSASSSSVVFPGG
GASSTPSNANLGLLVHRRLHPGTSCPRLSPPLHMATGAGEHHLARRVRSDPGGGGLAYAAYANGLGTQLP
GLPSSDTSGSSSSSSSSSSSSSSSSGLRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPE
CPVCHTAVTQAIRIFS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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