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Report for CCDS22499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22499.1 Public Mus musculus 8 Gpt2 23 108 98 CCDS HistoryNCBI Gene:108682Re-query CCDS DB by CCDS ID:22499.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22499.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034136.11 ENSMUSP00000034136.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034136.11Link to Ensembl Protein Viewer:ENSMUSP00000034136.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034136Re-query CCDS DB by Protein ID:ENSMUSP00000034136
Original member Current member NCBI NM_173866.4 NP_776291.1 Accepted alive Link to Nucleotide Sequence:NM_173866.4Link to Protein Sequence:NP_776291.1Re-query CCDS DB by Nucleotide ID:NM_173866Re-query CCDS DB by Protein ID:NP_776291Link to BLAST:NP_776291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776291.1 522 Q8BGT5 522 100% 0 0

Chromosomal Locations for CCDS 22499.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85492927 85493169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85503265 85503354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85505579 85505687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85509179 85509309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85512113 85512356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85516158 85516237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85517977 85518113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85519448 85519622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85521339 85521494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85523256 85523368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85525536 85525626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGCAGCGGGCAGCGGTGCTGGTGCGGCGGGGCTCCTGCCCCCGCGCCTCGGGCCCCTGGGGCCGTAGTC
AC
AGCAGCGCTGCAGCCGAAGCCTCGGCGGCGCTCAAGGTGCGACCGGAGCGCAGCCCTCGAGACCGCAT
C
CTCACCCTGGAGTCCATGAACCCGCAGGTGAAGGCGGTGGAGTACGCTGTGCGGGGACCCATCGTGCTC
AAA
GCCGGCGAGATCGAGATGGAGCTGCAGCGGGGTATCAAAAAACCATTCACTGAGGTAATCCGAGCCA
AC
ATTGGGGATGCCCATGCTATGGGCCAGCAGCCAATCACCTTCCTCCGTCAGGTGATGGCACTCTGCAC
C
TACCCAAACCTACTAAACAGCCCCAGCTTCCCAGAAGACGCTAAGAAACGAGCGCGGCGGATCCTGCAG
GCT
TGTGGTGGAAACAGCTTGGGATCTTACAGTGCTAGCCAAGGCGTTAACTGTATCCGTGAAGATGTGG
CA
GCCTTTATCACCAGGAGAGATGGTGTGCCTGCAGACCCAGACAACATTTACCTGACTACTGGAGCTAG
C
GACGGTATTTCTACAATCCTGAAGCTCCTGGTCTCCGGTGGTGGCAAGTCACGGACCGGCGTGATGATT
CCC
ATCCCCCAGTATCCCTTGTACTCCGCGGTCATCTCTGAGCTCGACGCGGTGCAGGTCAACTACTATC
TG
GATGAAGAGAACTGCTGGGCTTTGAATGTGGACGAGCTCCGGCGGGCATTGCGGCAAGCCAAAGACCA
C
TGTGACCCTAAAGTTCTCTGCATTATCAACCCCGGAAACCCCACAGGCCAGGTACAAAGCAGAAAGTGC
ATA
GAAGATGTGATTCACTTTGCCTGGGAAGAGAAGCTTTTTCTCCTGGCTGATGAGGTGTACCAGGACA
AC
GTGTACTCTCCAGACTGCAGATTCCACTCGTTTAAGAAAGTGCTTTACCAGATGGGGCACGAGTACTC
C
AGCAACGTGGAGCTCGCCTCCTTCCACTCCACCTCCAAGGGCTACATGGGCGAGTGTGGCTACAGAGGG
GGC
TACATGGAGGTGATCAATTTGCACCCCGAGATCAAAGGCCAGCTGGTGAAGCTACTCTCGGTTCGCC
TC
TGTCCGCCAGTGTCAGGACAGGCCGCCATGGACATTGTTGTGAATCCACCGGAACCAGGAGAGGAGTC
C
TTTGAGCAATTCAGCAGGGAAAAAGAATTCGTCCTTGGTAATCTGGCCAAAAAAGCAAAGCTGACAGAA
GAT
CTGTTTAACCAAGTCCCAGGGATCCAGTGCAACCCCTTGCAAGGAGCTATGTATGCGTTCCCTCGGA
TT
CTCATCCCTGCCAAGGCCGTGGAGGCAGCTCAGTCCCATAAAATGGCTCCAGACATGTTCTACTGCAT
G
AAGCTCCTGGAGGAGACTGGCATCTGTGTCGTGCCTGGCAGTGGCTTTGGGCAGCGAGAAGGCACTTAC
CAC
TTCAGAATGACCATTCTCCCTCCGGTGGATAAACTGAAGACCGTGCTCCACAAGGTGAAAGACTTTC
AC
CTGAAGTTCCTGGAGCAGTACTCATGA


Translation (522 aa):
MQRAAVLVRRGSCPRASGPWGRSHSSAAAEASAALKVRPERSPRDRILTLESMNPQVKAVEYAVRGPIVL
K
AGEIEMELQR
GIKKPFTEVIRANIGDAHAMGQQPITFLRQVMALCTYPNLLNSPSFPEDAKKRARRILQ
A
CGGNSL
GSYSASQGVNCIREDVAAFITRRDGVPADPDNIYLTTGASDGISTILKLLVSGGGKSRTGVMI
P
IPQYPLYSAVISELDAVQVNYYLDEENCWALNVDELRRALRQAKDHCDPKVLCIINPGNPT
GQVQSRKC
I
EDVIHFAWEEKLFLLADE
VYQDNVYSPDCRFHSFKKVLYQMGHEYSSNVELASFHSTSKGYMGECGYRG
G
YMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPEPGEESFEQFSR
EKEFVLGNLAKKAKLTE
D
LFNQVPGIQCNPLQGAMYAFPRILIPAKAVEAAQ
SHKMAPDMFYCMKLLEETGICVVPGSGFGQREGTY
H
F
RMTILPPVDKLKTVLHKVKDFHLKFLEQYS



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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