NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15180.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15180.2 Public Mus musculus 1 Rnpepl1 23 108 98 CCDS HistoryNCBI Gene:108657Re-query CCDS DB by CCDS ID:15180.2See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15180.1
The coding region has been updated to extend the N-terminus to one that is also supported by available conservation data. The update extends the CDS to an upstream in-frame AUG resulting in a 226 aa extension, has a strong Kozak signal and includes representation of a complete Peptidase_M1 domain.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15180.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027487.14 ENSMUSP00000027487.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027487.14Link to Ensembl Protein Viewer:ENSMUSP00000027487.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027487Re-query CCDS DB by Protein ID:ENSMUSP00000027487
Original member Current member NCBI NM_181405.4 NP_852070.3 Accepted alive Link to Nucleotide Sequence:NM_181405.4Link to Protein Sequence:NP_852070.3Re-query CCDS DB by Nucleotide ID:NM_181405Re-query CCDS DB by Protein ID:NP_852070Link to BLAST:NP_852070.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852070.3 720 G5E872 720 100% 0 0

Chromosomal Locations for CCDS 15180.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 92910971 92911483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92915059 92915199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92915814 92915965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92916355 92916471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92916711 92916946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92917147 92917260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92917634 92917746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92918018 92918126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92918873 92919103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92919184 92919326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92919562 92919855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGGCGGCGCAGTGCTGCTGCCGCAAGGCGCCCGGCGCCGAAGCCGCGCCCGCCCGCCCGCCGCCGGAGC
CGCCGCCCGCCCTGGACGTGGCCTCGGCCTCCAGCGCGCAGCTCTTCCGCCTCCGCCACCTGCAGCTGGG
CCTGGAGCTGCGGCCCGAGGCGCGTGAGCTGGCCGGCTGCCTGGTGCTGGAACTGTGCGCGCTGCGGCCC
GCGCCCCGCGCGCTCGTGCTCGACGCGCACCCGGCCTTGCGCCTACACTCGGTCTCGTTTCGCCGCGCCT
CCGCCGTCTCCGAGTCGCCGTGCACCTTCGCCTTCCCTGCCCCGGGGTCGGGGCCCCCGCTGCCCGGCTT
CGCCGATGCGCCTGGAGCGGAGTCTGCCAGCTGCCCGCTGGCCTTCAGGCTGGACCCGTTCACCGACTAT
GGCTCCTCTCTGACCGTCACACTGCCTCCCGAGGTGCAGGCGCACCAGCCCTTCCAGGTCATCCTACGCT
ACACCTCGACCGACGCCCCGGCCATCTGGTGGCTGGACCCGGAGCTGACCTATGGCAATGCCAAGCCATT
CGTCTTCACCCAGGGACACTCTGTGTGCAACCGCTCCTTCTTCCCGTGCTTCGATACGCCGGCGGTCAAG
TGCACCTACTCAGCCGTTGTCAAGGCCCCCTTAGGGGTACAGGTGCTGATGAGTGCAACCCAGAGCGTGT
ACGTGGAAGAGGAAGGCCTCTACCACTTCCACATGGAGCACCCAGTACCCGCCTACCTCGTAGCCCTTGT
GGCCGGAGACCTCAAGCCAGCAGACATTGGGCCCAGGAGCCGTGTGTGGGCTGAGCCATGCCTCCTGCCC
ACAGCCACCAGCAAGCTATCAGGTGCAGTGGAACAGTGGCTGAGTGCAGCAGAGCGATTATATGGACCAT
ACATGTGGGGCAGATATGACATCGTCTTCCTGCCGCCCTCCTTCCCCATCGTGGCCATGGAGAACCCCTG
CCTCACCTTCATCATCTCCTCCATCCTTGAGAGTGACGAGTTCCTGGTGATTGATGTCATCCATGAGGTA
GCCCACAGCTGGTTCGGCAATGCTGTCACCAACGCTACTTGGGAGGAGATGTGGCTGAGTGAGGGCCTGG
CCACCTATGCACAGCGCCGCATCACCACGGAGACCTATGGGGCTGCCTTCACCTGCCTAGAGACAGCCTT
CCGCTTGGATGCCCTGCATAGGCAGATGCGGCTTCTTGGGGAAGATAGTCCGGTTAGCAAGTTGCAGGTC
AAGCTAGAACCAGGCGTGAATCCTAGTCACCTGATGAACCTGTTCACCTATGAGAAGGGCTACTGCTTCG
TGTACTACCTGTCCCAGCTCTGTGGCGGTCCCCAGCGCTTTGACGACTTTCTCCGAGCCTATGTGGAGAA
ATACAAGTTCACCAGTGTGGTGGCCCAGGACCTGCTGGATTCCTTCCTGAGCTTCTTCCCTGAACTGAAG
GAGCAGAGCGTGGACTGCCGGGCAGGGCTGGAGTTCGAGCGCTGGCTCAATGCCACAGGCCCACCACTGG
CTGAGCCAGACCTGTCACAGGGGTCCAGCCTAACCCGGCCTGTGGAAGCCCTTTTCCAGCTGTGGACTGC
AGAGCCCCTGGAGCAGGCGGCAGCTTCAGCCAGTGCCATTGACATCTCCAAATGGAGGACCTTCCAGACA
GCACTCTTCCTGGACCGGCTGCTAGATGGATCCCCGTTGCCTCAGGAGGTGGTGATGAGCCTGTCCAAGT
GCTACTCATCCCTGCTGGACTCCATGAACGCTGAGATCCGCATCCGCTGGCTGCAGATCGTTGTCCGCAA
TGACTACTATCCTGATCTTCACAGGGTCCGCCGTTTCCTGGAAAGCCAGATGTCGCGCATGTACACCATC
CCACTGTACGAGGACCTCTGCACTGGTGCCCTCAAGTCCTTCGCTCTAGAGGTCTTCTACCAAACCCAGG
GCCGGCTGCATCCCAACTTGCGCAGAACCATCCAGCAGATCCTGTCCCAGGGGCTAGGCCCCAGTGCGGA
GCCGAGTACAGAGCCCAGCACGGACCTGGGCGGTGCTGAGGCAGACACGAACCCAGACTCGCCAGCCCTG
CTGCTCGGGGACGAGGCCCCCAGCAGCACCATCTCTCTCAGGGACGTCAATGTGTCTGCCTAG

Translation (720 aa):
MAAQCCCRKAPGAEAAPARPPPEPPPALDVASASSAQLFRLRHLQLGLELRPEARELAGCLVLELCALRP
APRALVLDAHPALRLHSVSFRRASAVSESPCTFAFPAPGSGPPLPGFADAPGAESASCPLAFRLDPFTDY
GSSLTVTLPPEVQAHQPFQVILRYTSTDAPAIWWLDPELTYGNAKPFVFTQGHSVCNRSFFPCFDTPAVK
CTYSAVVKAPLGVQVLMSATQSVYVEEEGLYHFHMEHPVPAYLVALVAGDLKPADIGPRSRVWAEPCLLP
TATSKLSGAVEQWLSAAERLYGPYMWGRYDIVFLPPSFPIVAMENPCLTFIISSILESDEFLVIDVIHEV
AHSWFGNAVTNATWEEMWLSEGLATYAQRRITTETYGAAFTCLETAFRLDALHRQMRLLGEDSPVSKLQV
KLEPGVNPSHLMNLFTYEKGYCFVYYLSQLCGGPQRFDDFLRAYVEKYKFTSVVAQDLLDSFLSFFPELK
EQSVDCRAGLEFERWLNATGPPLAEPDLSQGSSLTRPVEALFQLWTAEPLEQAAASASAIDISKWRTFQT
ALFLDRLLDGSPLPQEVVMSLSKCYSSLLDSMNAEIRIRWLQIVVRNDYYPDLHRVRRFLESQMSRMYTI
PLYEDLCTGALKSFALEVFYQTQGRLHPNLRRTIQQILSQGLGPSAEPSTEPSTDLGGAEADTNPDSPAL
LLGDEAPSSTISLRDVNVSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH