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Report for CCDS41021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41021.1 Public Mus musculus X Fam50a 23 108 98 CCDS HistoryNCBI Gene:108160Re-query CCDS DB by CCDS ID:41021.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114160.1 ENSMUSP00000109797.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114160.1Link to Ensembl Protein Viewer:ENSMUSP00000109797.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114160Re-query CCDS DB by Protein ID:ENSMUSP00000109797
Original member Current member NCBI NM_138607.3 NP_613073.2 Accepted alive Link to Nucleotide Sequence:NM_138607.3Link to Protein Sequence:NP_613073.2Re-query CCDS DB by Nucleotide ID:NM_138607Re-query CCDS DB by Protein ID:NP_613073Link to BLAST:NP_613073.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613073.2 339 Q9WV03 339 100% 0 0

Chromosomal Locations for CCDS 41021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 74313215 74313325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74314677 74314761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74314864 74314963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74315427 74315572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74317430 74317506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74317637 74317703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74318142 74318203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74318368 74318444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74318815 74318869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74319050 74319098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74319191 74319261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74319392 74319502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74319960 74319968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGCCCAGTACAAGGGCGCTGCAAGCGAGGCGGGACGCGCCATGCACCTAATGAAGAAGAGGGAGAAGC
AGCGTGAGCAAATGGAGCAGATGAAGCAGAGGATTGCAGAGGAGAACATAATGAAATCTAACATTGACAA
GAAATTCTCTGCACACTATGATGCTGTGGAAGCAGAGCTCAAGTCCAGTACTGTGGGTCTTGTGACTCTG
AATGACATGAAGGCCAAACAGGAGGCACTGGTGAAGGAGCGAGAGAAACAGCTGGCAAAAAAGGAGCAGT
CAAAGGAGCTACAGCTGAAACTAGAGAAGCTTCGAGAGAAGGAGCGCAAGAAGGAGGCCAAGCGGAAGAT
CTCCAGCCTGTCCTTCACCTTGGAGGAAGAGGAGGAGGGAGTTGAAGAGGAGGAAGAGATGGCTATGTAC
GAGGAGGAACTGGAGAGGGAAGAGATCACCACAAAGAAAAAGAAATTGGGGAAGAACCCTGATGTGGACA
CAAGCTTCTTGCCTGACCGGGACCGGGAGGAGGAGGAGAATCGGCTTCGGGAAGAGCTGCGCCAGGAGTG
GGAAGCCAAGCAGGAAAAAATCAAGAGTGAAGAGATTGAAATCACCTTTAGTTACTGGGATGGCTCTGGG
CACCGGCGCACAGTTAAGATGAAGAAAGGCAACACGATGCAGCAGTTCCTACAGAAAGCACTAGAGATCT
TGCGGAAAGACTTCAGTGAACTCAGGTCAGCAGGGGTGGAACAGCTCATGTACATCAAGGAGGATTTAAT
CATCCCCCATCATCACAGCTTCTATGACTTCATCGTTACCAAGGCACGAGGAAAAAGTGGGCCACTCTTC
AACTTCGACGTTCATGATGATGTACGACTGCTCAGTGATGCCACTGTGGAGAAGGATGAGTCACATGCAG
GCAAAGTAGTGCTAAGGAGCTGGTATGAGAAGAACAAGCACATTTTTCCTGCCAGTCGCTGGGAGCCCTA
TGACCCAGAAAAGAAATGGGACAAGTACACGATCCGGTGA

Translation (339 aa):
MAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAELKSSTVGLVTL
NDMKAKQEALVKEREKQLAKKEQSKELQLKLEKLREKERKKEAKRKISSLSFTLEEEEEGVEEEEEMAMY
EEELEREEITTKKKKLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSG
HRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLF
NFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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