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Report for CCDS15030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15030.1 Public Mus musculus 1 Atic 23 108 98 CCDS HistoryNCBI Gene:108147Re-query CCDS DB by CCDS ID:15030.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027384.5 ENSMUSP00000027384.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027384.5Link to Ensembl Protein Viewer:ENSMUSP00000027384.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027384Re-query CCDS DB by Protein ID:ENSMUSP00000027384
Original member Current member NCBI NM_026195.3 NP_080471.2 Accepted alive Link to Nucleotide Sequence:NM_026195.3Link to Protein Sequence:NP_080471.2Re-query CCDS DB by Nucleotide ID:NM_026195Re-query CCDS DB by Protein ID:NP_080471Link to BLAST:NP_080471.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080471.2 592 Q9CWJ9 592 100% 0 0

Chromosomal Locations for CCDS 15030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 71557256 71557274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71557497 71557623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71559226 71559302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71560889 71560955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71563759 71563847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71564406 71564557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71564811 71564967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71567814 71567939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71568963 71569070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71569840 71569925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71570840 71570929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71572908 71573036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71576041 71576133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71576617 71576799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71577786 71577941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71578552 71578671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGCTCCGTCTCAGCTTGCCCTGTTCAGTGTGTCTGACAAAACTGGCCTCGTGGAATTTGCCAGAAGTC
TCGCGTCTCTTGGTTTGAGTCTGGTCGCTTCCGGAGGCACGGCAAAAGCGATCAGGGATGCTGGCCTGGC
AGTCAGAGATGTGTCTGAGCTAACAGGGTTCCCTGAAATGTTAGGGGGACGCGTGAAAACCTTGCACCCT
GCGGTCCATGCTGGGATCTTGGCACGCAACATTCCAGAAGACGCTGCAGACATGGCCAGGCTTGATTTCA
ACCTTGTAAGGGTTGTGGTCTGTAACCTGTACCCCTTCGTGAAGACTGTGGCTTCTCCAGATGTAACTGT
TGAGGCAGCTGTTGAACAAATTGATATTGGTGGCGTGACATTACTGAGAGCTGCAGCCAAAAACCACGCT
CGAGTGACAGTCGTCTGTGAACCAGAGGACTATGCGGGGGTAGCTGCAGAGATGCACGGCTCTGATAGTA
AGGACACCTCCCTAGAGACCAGGCGCCACTTGGCCTTGAAGGCATTCACTCATACCGCTCAATACGATGA
AGCAATTTCAGATTACTTCAGGAAACAGTACAGTAAGGGAATTTCTCAGATGCCCTTGCGGTATGGGATG
AACCCCCATCAGACTCCTGCCCAGTTGTATACGCTGAAGCCCAAACTTCCCATCACAGTTCTCAATGGAG
CCCCAGGATTCATAAACTTGTGTGACGCTTTGAACGCCTGGCAGCTGGTGACAGAGCTGAGAGGAGCAGT
AGACATCCCAGCGGCTGCTTCTTTCAAGCACGTCAGCCCGGCAGGTGCTGCTGTTGGGGTTCCACTCAGT
GAGGACGAGGCCAGAGTCTGCATGGTCTATGACCTCTACCCGACCCTCACGCCCCTGGCCGTTGCATATG
CAAGAGCAAGAGGAGCTGATAGGATGTCTTCATTTGGTGATTTTGTTGCATTGTCTGACATTTGTGATGT
CCCAACTGCAAAAATTATCTCCAGAGAAGTGTCGGATGGTATTGTTGCCCCGGGATATGAAGAAGAAGCC
TTGAAAATACTTTCTAAAAAGAAAAATGGAAACTACTGTGTTCTTCAGATGGACCAGTCCTACAAACCAG
ATGAAAATGAAGTTCGAACACTCTTTGGTCTTCGTTTAAGCCAGAAGAGAAATAATGGTGTCGTTGACAA
GTCATTATTTAGCAATATTGTCACCAAGAATAAAGATCTGCCGGAGTCTGCACTCAGAGACCTCATTGTC
GCCACCGTCGCTGTCAAGTATACTCAGTCTAATTCGGTGTGCTATGCCAAGGATGGGCAGGTTATTGGCA
TCGGAGCAGGACAGCAGTCTCGGATACACTGCACTCGCCTTGCAGGTGATAAGGCAAACTCTTGGTGGCT
TCGGCACCACCCACGAGTGCTGTCCATGAAGTTTAAAGCCGGGGTGAAGAGAGCAGAGATCTCCAATGCG
ATTGATCAGTATGTGACCGGCACTATCGGTGAGGGCGAAGACCTGGTGAAATGGGAAGCACTGTTCGAAG
AGGTTCCTGAGTTACTCACGGAGGCGGAGAAGAAGGAATGGGTGGACAAGCTGAGCGGCGTGTCTGTCAG
CTCCGACGCCTTCTTTCCTTTCAGGGATAATGTGGACCGAGCTAAAAGGAGTGGTGTGGCCTACATTGTC
GCTCCATCTGGATCTACTGCTGACAAGGTTGTGATTGAGGCGTGCGACGAGCTGGGGATTGTCTTGGCTC
ATACGGATCTCCGGCTCTTCCACCACTGA

Translation (592 aa):
MAPSQLALFSVSDKTGLVEFARSLASLGLSLVASGGTAKAIRDAGLAVRDVSELTGFPEMLGGRVKTLHP
AVHAGILARNIPEDAADMARLDFNLVRVVVCNLYPFVKTVASPDVTVEAAVEQIDIGGVTLLRAAAKNHA
RVTVVCEPEDYAGVAAEMHGSDSKDTSLETRRHLALKAFTHTAQYDEAISDYFRKQYSKGISQMPLRYGM
NPHQTPAQLYTLKPKLPITVLNGAPGFINLCDALNAWQLVTELRGAVDIPAAASFKHVSPAGAAVGVPLS
EDEARVCMVYDLYPTLTPLAVAYARARGADRMSSFGDFVALSDICDVPTAKIISREVSDGIVAPGYEEEA
LKILSKKKNGNYCVLQMDQSYKPDENEVRTLFGLRLSQKRNNGVVDKSLFSNIVTKNKDLPESALRDLIV
ATVAVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEISNA
IDQYVTGTIGEGEDLVKWEALFEEVPELLTEAEKKEWVDKLSGVSVSSDAFFPFRDNVDRAKRSGVAYIV
APSGSTADKVVIEACDELGIVLAHTDLRLFHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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