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Report for CCDS17176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17176.1 Public Mus musculus 2 Slco4a1 23 108 98 CCDS HistoryNCBI Gene:108115Re-query CCDS DB by CCDS ID:17176.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17176.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038225.7 ENSMUSP00000045023.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038225.7Link to Ensembl Protein Viewer:ENSMUSP00000045023.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038225Re-query CCDS DB by Protein ID:ENSMUSP00000045023
Original member Current member EBI ENSMUST00000038259.12 ENSMUSP00000046502.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038259.12Link to Ensembl Protein Viewer:ENSMUSP00000046502.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038259Re-query CCDS DB by Protein ID:ENSMUSP00000046502
Original member Current member NCBI NM_001355218.1 NP_001342147.1 Accepted alive Link to Nucleotide Sequence:NM_001355218.1Link to Protein Sequence:NP_001342147.1Re-query CCDS DB by Nucleotide ID:NM_001355218Re-query CCDS DB by Protein ID:NP_001342147Link to BLAST:NP_001342147.1
Original member Current member NCBI NM_148933.1 NP_683735.1 Accepted alive Link to Nucleotide Sequence:NM_148933.1Link to Protein Sequence:NP_683735.1Re-query CCDS DB by Nucleotide ID:NM_148933Re-query CCDS DB by Protein ID:NP_683735Link to BLAST:NP_683735.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342147.1 723 Q8K078-1 723 100% 0 0
NP_683735.1 723 Q8K078-1 723 100% 0 0

Chromosomal Locations for CCDS 17176.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180464027 180464828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180465597 180465687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180467058 180467179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180467567 180467678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180471104 180471258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180472054 180472249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180472405 180472570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180472661 180472833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180473103 180473167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180473514 180473662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180474104 180474244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGCCCCAGCACGCGATGGGGGACACACATTTCCTCTCCCTCCCGAAGCACCTCTTTACTAGCACGTCCT
CAGCCACGGACAGCGGGTGTGACACTCCGCCCAGCAGCAGAGCATCCCCAGCCTCCCTGCGCTCTGCCCA
CGGCACCCTGGGCTCCTCCAGCCAACCCCTGTTTGAGCCCCAGGCTGAGAAGCGGAGTAGCCAGACAGCC
CGTGAGGTGCAGTATGTGTCCTCGGGGCCACAGAACTCACTGTGCGGCTGGCAAGCCTTCACGCCCAAGT
GCTTGCAGGTCTTCAACACCCCCAAGGGCTTCCTCTTCTTCCTGTGTGCGGCCTCCTTCCTTCAGGGCAT
GACAGTGAATGGCTTCATCAATACTGTCATCACCTCCATCGAACGCCGCTTCGATCTGCACAGCTACCAG
AGCGGGCTCATCGCCAGCTCCTATGACATCGCTGCCTGCCTATGCCTTACCTTCGTCAGCTACTTTGGGG
GCAATGGGCACAAACCGCGATGGCTGGGCTGGGGTGTGCTGGTCCTGGGAATCGGCTCCCTGGTATTTGC
ACTGCCCCATTTCACTGCCGGCCGCTATGAGGTAGAGATGGATGAGGGGCTGGGGACTGGGACGTGCCTG
ACTAATCAGAGTCATGTGGAGTGTAAAGACAGTGCCTCAGGCCTGTCCAACTACCGGCTGATCTTCATGC
TGGGCCAGCTCCTGCACGGTGTGGGTGCCACGCCGCTCTACACACTGGGCGTCACGTACCTGGATGAGAA
CGTCAAGTCAAGTTACTCACCCATCTATATCGCCATCTTCTACACGGCAGCCATCCTTGGACCTGCAGCA
GGCTACCTGATTGGAGGAGCCATGCTAAACGTTTACACAGAAGTGGGCCAACGGACGGAGCTGACCACTG
ACAGCCCACTGTGGGTTGGTGCCTGGTGGATCGGCTTCCTAGGAACCGGGATTGCTGCATTCCTCATCGC
CATCCCCATCCTTGGCTATCCCCGGCAGCTACCAGGCTCCCAGCGCTACGTTGTTATGAGAGCGGCTGAA
ACACAGCAGCTGAAAGACCACAGCCGCGGAGCAGTGAGCAATCCAGCTTTTGGCAAGACTGTCAGAGACC
TGCCCCTCTCCATCTGGCTCCTTCTAAGAAACCCCACGTTCATCCTGCTCTGCCTGGCAGGGGCCACTGA
AGCCACACTCATTGCCGGCATGTCCACATTCGGTCCCAAGTTCTTCGAGGCCCAGTTCAGCTTGAGTGCC
TCCGAGGCTGCCACCCTGTTCGGATACCTGGTGGTGCCAGCAGGCGGTGGTGGTACACTCCTAGGTGGCT
TCCTGGTAAACAAGTTCAAGCTCCGTGGCTCTGGGATCATCAGGTTCTGTCTATTCTGCACCTTGACCAG
CCTACTAGCCTTCTTTGTCTTCCTCATGCACTGCCCCAATGTGCACATGGCAGGTGTGACCACCGGCTAC
GTTGGGAGCCTCCTGCCTAAAGGACAGCTGGACCTAAAGGCAGCTTGCAACGCCATCTACTGTTGCCAGC
CGAAGCACTACAGCCCCCTGTGTGGCTCAGATGGCACCATGTACTACTCTCCCTGCTACGCAGGCTGCCC
TGCTGATGCCGAGACAGACCTGGGTGGCCAGAAGGTATACCGAGGCTGTAGCTGTATCCTTGAGAAGGCT
TCCTCTGGCTGGGGCAATGCTACCGCAGGGAAGTGCGCTTCCACCTGTCAGAGCAAGCCCTTCCTTCTGG
TTCTCGTGTTCGTTGTAATTATCTTTACATTCCTCAGCAGCATTCCAGCGCTAACTGCTACTCTACGGTG
TGTCAGTGATCGGCAAAGATCCTTTGCCCTGGGGATCCAGTGGATCGTCGTAAGAACACTAGGCAGTATT
CCGGGGCCCATTGCCTTTGGCTGGGTGATTGACAAGGCCTGCCTGCTGTGGCAAGACCAGTGTGGTCATC
AGGGCTCCTGCTTCGTGTATGAGAATGAAGCCATGAGCCGGTACATGCTCATCGCAGGGCTCACTTTCAA
GGTGTTGGGCTTCCTCTTCTTCGTCGCCGCCTACTTTCTCTACAAGTCCCCTTCCGTGTCCTCAGATGGT
CTAGAGGCCTCCCTGCCCAGCCAGTCCTCGGCCTCTGACAGTCCCACAGAACAGCTCCAGAGCAACGTGT
GA

Translation (723 aa):
MPQHAMGDTHFLSLPKHLFTSTSSATDSGCDTPPSSRASPASLRSAHGTLGSSSQPLFEPQAEKRSSQTA
REVQYVSSGPQNSLCGWQAFTPKCLQVFNTPKGFLFFLCAASFLQGMTVNGFINTVITSIERRFDLHSYQ
SGLIASSYDIAACLCLTFVSYFGGNGHKPRWLGWGVLVLGIGSLVFALPHFTAGRYEVEMDEGLGTGTCL
TNQSHVECKDSASGLSNYRLIFMLGQLLHGVGATPLYTLGVTYLDENVKSSYSPIYIAIFYTAAILGPAA
GYLIGGAMLNVYTEVGQRTELTTDSPLWVGAWWIGFLGTGIAAFLIAIPILGYPRQLPGSQRYVVMRAAE
TQQLKDHSRGAVSNPAFGKTVRDLPLSIWLLLRNPTFILLCLAGATEATLIAGMSTFGPKFFEAQFSLSA
SEAATLFGYLVVPAGGGGTLLGGFLVNKFKLRGSGIIRFCLFCTLTSLLAFFVFLMHCPNVHMAGVTTGY
VGSLLPKGQLDLKAACNAIYCCQPKHYSPLCGSDGTMYYSPCYAGCPADAETDLGGQKVYRGCSCILEKA
SSGWGNATAGKCASTCQSKPFLLVLVFVVIIFTFLSSIPALTATLRCVSDRQRSFALGIQWIVVRTLGSI
PGPIAFGWVIDKACLLWQDQCGHQGSCFVYENEAMSRYMLIAGLTFKVLGFLFFVAAYFLYKSPSVSSDG
LEASLPSQSSASDSPTEQLQSNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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