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Report for CCDS28040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28040.1 Public Mus musculus 16 B3gnt5 23 108 98 CCDS HistoryNCBI Gene:108105Re-query CCDS DB by CCDS ID:28040.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079780.9 ENSMUSP00000078712.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079780.9Link to Ensembl Protein Viewer:ENSMUSP00000078712.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079780Re-query CCDS DB by Protein ID:ENSMUSP00000078712
Original member Current member EBI ENSMUST00000121344.7 ENSMUSP00000112624.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121344.7Link to Ensembl Protein Viewer:ENSMUSP00000112624.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121344Re-query CCDS DB by Protein ID:ENSMUSP00000112624
Original member Current member EBI ENSMUST00000119468.1 ENSMUSP00000113145.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119468.1Link to Ensembl Protein Viewer:ENSMUSP00000113145.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119468Re-query CCDS DB by Protein ID:ENSMUSP00000113145
Original member Current member EBI ENSMUST00000164397.7 ENSMUSP00000126157.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164397.7Link to Ensembl Protein Viewer:ENSMUSP00000126157.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164397Re-query CCDS DB by Protein ID:ENSMUSP00000126157
Original member Current member NCBI NM_001159407.1 NP_001152879.1 Accepted alive Link to Nucleotide Sequence:NM_001159407.1Link to Protein Sequence:NP_001152879.1Re-query CCDS DB by Nucleotide ID:NM_001159407Re-query CCDS DB by Protein ID:NP_001152879Link to BLAST:NP_001152879.1
Original member Current member NCBI NM_001159408.1 NP_001152880.1 Accepted alive Link to Nucleotide Sequence:NM_001159408.1Link to Protein Sequence:NP_001152880.1Re-query CCDS DB by Nucleotide ID:NM_001159408Re-query CCDS DB by Protein ID:NP_001152880Link to BLAST:NP_001152880.1
Original member Current member NCBI NM_054052.3 NP_473393.2 Accepted alive Link to Nucleotide Sequence:NM_054052.3Link to Protein Sequence:NP_473393.2Re-query CCDS DB by Nucleotide ID:NM_054052Re-query CCDS DB by Protein ID:NP_473393Link to BLAST:NP_473393.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152879.1 376 Q8BGY6 376 100% 0 0
NP_001152880.1 376 Q8BGY6 376 100% 0 0
NP_473393.2 376 Q8BGY6 376 100% 0 0

Chromosomal Locations for CCDS 28040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19769033 19770163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGAGACTGTTTGTTAGCAGAAGAGTCAAAAGATGGAAAATTTTTCACTTTTTTGTCACTTGTTTTATAT
TAAGCTTCATGGTTTTTTGGAGCCCAATCAATAATTACATCATGAGCCATATGAAGTCCTACTCCTACAG
ATACCTCGTAAATAGCTATGGCTTTGTAAACAATTCCCTGTCTCTCAAGCACAGCTCTGTGCAGCCTCAC
TACCCATACTTGATCAACCACAGAGAGAAGTGTCAGGCTCAAGATGTCCTCCTCTTACTGTTTATAAAGA
CTGCCCCTGAAAACTATGGCCGACGTTCTGCAATCAGAAAAACGTGGGGCAATGAGAACTATGTTCAGTC
TCAACTCAATGCCAACATCAAAATTCTGTTTGCATTAGGAACTCCTGGTCCACTGAAGGGAAAAGAACTG
CAAAAAAGACTAATCGGGGAAGATCAAGTGTACAAGGATATAATTCAGCAAGATTTCATTGATTCTTTCC
ACAATCTTACTTCTAAATTCCTTCTTCAGTTCAGCTGGGCAAATACCTTTTGTCCACATGCCAAATTCCT
GATGACTGCTGATGATGATATATTTATCCACATGCCAAATCTCATTGAATATCTTCAAGGGCTAGAGCAG
ATTGGAGTTCGAGACTTTTGGATTGGTCACGTTCATCGAGGTGGCCCTCCTGTTAGGGATAAAAGCAGCA
AATACTATGTTCCCTATGAAATGTACAAGTGGCCAGCCTACCCTGACTATACAGCTGGTGCTGCCTATGT
TGTCTCCAGAGATGTAGCTGCCAAAATCTATGAGGCATCGCAGACACTGAATTCCAGTATGTACATAGAT
GATGTATTCATGGGCCTCTGTGCCAATAAAGTGGGAATCTTGCCACAGGACCATGTATTTTTCTCTGGGG
AAGGGAAAATTCCTTATCACCCCTGCATCTATGAAAAGATGATGACATCTCACGGACACTTACAAGATCT
GCAGGACCTCTGGATAGAGGCTACACATCCTAAAGTAAAGAACATTTCAAAAGGGTTTTTTGGTCAAATA
TACTGCAGGTTAATTAAGATAGTTCTTCTCTGCAGACTGACTTACAGGAATTCATACCCTTGTTGGGCTG
CATTTGCTTAG

Translation (376 aa):
MRLFVSRRVKRWKIFHFFVTCFILSFMVFWSPINNYIMSHMKSYSYRYLVNSYGFVNNSLSLKHSSVQPH
YPYLINHREKCQAQDVLLLLFIKTAPENYGRRSAIRKTWGNENYVQSQLNANIKILFALGTPGPLKGKEL
QKRLIGEDQVYKDIIQQDFIDSFHNLTSKFLLQFSWANTFCPHAKFLMTADDDIFIHMPNLIEYLQGLEQ
IGVRDFWIGHVHRGGPPVRDKSSKYYVPYEMYKWPAYPDYTAGAAYVVSRDVAAKIYEASQTLNSSMYID
DVFMGLCANKVGILPQDHVFFSGEGKIPYHPCIYEKMMTSHGHLQDLQDLWIEATHPKVKNISKGFFGQI
YCRLIKIVLLCRLTYRNSYPCWAAFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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