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Report for CCDS15245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15245.1 Public Mus musculus 1 Mgat5 23 108 98 CCDS HistoryNCBI Gene:107895Re-query CCDS DB by CCDS ID:15245.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038361.10 ENSMUSP00000038359.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038361.10Link to Ensembl Protein Viewer:ENSMUSP00000038359.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038361Re-query CCDS DB by Protein ID:ENSMUSP00000038359
Original member Current member EBI ENSMUST00000171405.1 ENSMUSP00000129166.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171405.1Link to Ensembl Protein Viewer:ENSMUSP00000129166.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171405Re-query CCDS DB by Protein ID:ENSMUSP00000129166
Original member Current member NCBI NM_145128.3 NP_660110.2 Accepted alive Link to Nucleotide Sequence:NM_145128.3Link to Protein Sequence:NP_660110.2Re-query CCDS DB by Nucleotide ID:NM_145128Re-query CCDS DB by Protein ID:NP_660110Link to BLAST:NP_660110.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660110.2 740 Q8R4G6 740 100% 0 0

Chromosomal Locations for CCDS 15245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 127306776 127307016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127320604 127320765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127365148 127365224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127366403 127366492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127382921 127382992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127384768 127384929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127387343 127387512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127390744 127390878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127397507 127397640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127412127 127412260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127446242 127446391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127459836 127459982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127469192 127469308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127471501 127471575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127479465 127479622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127482527 127482725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2223 nt):
ATGGCTTTCTTTTCTCCCTGGAAGTTGTCCTCTCAGAAGCTGGGCTTTTTCCTGGTGACTTTCGGCTTCA
TCTGGGGCATGATGCTTCTGCACTTCACCATCCAGCAGCGGACTCAGCCCGAGAGCAGCTCCATGTTACG
GGAGCAGATCCTTGACCTCAGCAAGAGGTACATTAAGGCACTGGCAGAGGAGAACAGGGACGTGGTGGAT
GGCCCCTACGCTGGTGTCATGACAGCCTATGATCTGAAGAAAACGCTCGCCGTCTTGCTGGATAACATCC
TGCAGCGCATTGGCAAGCTCGAGTCAAAGGTGGACAATCTGGTCAACGGCACAGGAGCGAACTCCACCAA
CTCCACCACGGCTGTCCCCAGCTTGGTGTCGCTTGAGAAAATTAATGTGGCAGATATCATTAATGGAGTT
CAGGAAAAATGTGTATTGCCTCCTATGGATGGCTACCCCCACTGCGAGGGGAAAATCAAGTGGATGAAGG
ACATGTGGCGCTCGGACCCCTGCTACGCAGACTATGGAGTGGACGGGACCTCCTGCTCCTTTTTTATTTA
CCTCAGTGAGGTTGAAAATTGGTGTCCTCGTTTACCTTGGAGAGCAAAAAATCCCTATGAAGAAGCTGAT
CATAACTCATTGGCGGAAATCCGTACGGATTTTAACATTCTCTACGGCATGATGAAGAAGCACGAGGAGT
TCCGTTGGATGAGGCTTCGGATCCGGCGAATGGCTGACGCGTGGATCCAAGCTATCAAGTCTCTGGCGGA
GAAACAAAACCTTGAGAAGAGGAAACGGAAGAAAATCCTTGTTCACCTGGGGCTCCTGACCAAGGAATCG
GGCTTCAAGATTGCGGAGACAGCATTCAGCGGTGGCCCTCTGGGTGAACTCGTTCAGTGGAGTGACTTAA
TCACATCTCTGTACCTGCTGGGCCATGACATCCGGATCTCGGCCTCACTGGCTGAGCTCAAGGAGATAAT
GAAGAAGGTTGTTGGAAACCGGTCTGGCTGTCCAACTGTAGGAGACAGAATCGTTGAGCTGATTTATATC
GATATTGTGGGACTTGCTCAATTTAAGAAAACACTAGGGCCATCCTGGGTTCATTACCAGTGCATGCTCC
GGGTGCTAGACTCCTTTGGAACAGAACCTGAGTTCAATCATGCGAGCTATGCCCAGTCAAAAGGCCACAA
GACCCCCTGGGGAAAGTGGAATCTGAACCCGCAGCAGTTTTACACCATGTTCCCTCATACCCCAGACAAC
AGCTTTCTGGGCTTCGTGGTGGAGCAGCACCTGAACTCCAGCGACATTCACCACATCAACGAGATCAAAA
GGCAGAACCAGTCCCTTGTGTATGGCAAAGTGGATAGTTTCTGGAAGAATAAGAAAATCTACCTGGATAT
CATTCACACGTACATGGAAGTGCACGCCACTGTTTATGGCTCCAGTACCAAGAACATTCCCAGTTACGTG
AAAAACCATGGCATTCTCAGTGGACGTGACCTGCAGTTTCTTCTCCGGGAAACCAAGCTGTTCGTTGGGC
TCGGATTCCCTTATGAAGGCCCAGCTCCCCTGGAGGCCATCGCGAATGGATGTGCTTTCCTGAACCCCAA
GTTCAACCCTCCCAAAAGCAGCAAAAACACAGACTTCTTCATTGGCAAGCCAACACTGAGAGAGCTGACA
TCCCAGCATCCTTACGCAGAAGTCTTCATCGGCCGGCCACACGTCTGGACTGTGGATCTCAATAACCGAG
AGGAAGTAGAAGATGCAGTAAAAGCCATCTTAAACCAGAAGATTGAGCCGTATATGCCATATGAGTTCAC
ATGTGAAGGCATGCTGCAGAGAATCAACGCTTTCATTGAAAAACAGGACTTCTGCCATGGCCAAGTGATG
TGGCCGCCCCTCAGCGCCCTGCAGGTGAAGCTGGCTGAGCCAGGGCAGTCCTGCAAACAGGTGTGCCAGG
AGAGCCAGCTCATCTGCGAGCCTTCCTTCTTTCAACACCTCAACAAGGAAAAGGACCTGCTGAAGTATAA
GGTGACCTGCCAAAGCTCAGAACTGTACAAGGACATCCTGGTGCCCTCCTTCTACCCCAAGAGCAAGCAC
TGTGTGTTCCAAGGGGACCTCCTGCTCTTCAGTTGTGCCGGAGCCCACCCCACACACCAGCGGATCTGCC
CCTGCCGGGACTTCATCAAGGGCCAAGTGGCCCTCTGCAAAGACTGCCTATAG

Translation (740 aa):
MAFFSPWKLSSQKLGFFLVTFGFIWGMMLLHFTIQQRTQPESSSMLREQILDLSKRYIKALAEENRDVVD
GPYAGVMTAYDLKKTLAVLLDNILQRIGKLESKVDNLVNGTGANSTNSTTAVPSLVSLEKINVADIINGV
QEKCVLPPMDGYPHCEGKIKWMKDMWRSDPCYADYGVDGTSCSFFIYLSEVENWCPRLPWRAKNPYEEAD
HNSLAEIRTDFNILYGMMKKHEEFRWMRLRIRRMADAWIQAIKSLAEKQNLEKRKRKKILVHLGLLTKES
GFKIAETAFSGGPLGELVQWSDLITSLYLLGHDIRISASLAELKEIMKKVVGNRSGCPTVGDRIVELIYI
DIVGLAQFKKTLGPSWVHYQCMLRVLDSFGTEPEFNHASYAQSKGHKTPWGKWNLNPQQFYTMFPHTPDN
SFLGFVVEQHLNSSDIHHINEIKRQNQSLVYGKVDSFWKNKKIYLDIIHTYMEVHATVYGSSTKNIPSYV
KNHGILSGRDLQFLLRETKLFVGLGFPYEGPAPLEAIANGCAFLNPKFNPPKSSKNTDFFIGKPTLRELT
SQHPYAEVFIGRPHVWTVDLNNREEVEDAVKAILNQKIEPYMPYEFTCEGMLQRINAFIEKQDFCHGQVM
WPPLSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKEKDLLKYKVTCQSSELYKDILVPSFYPKSKH
CVFQGDLLLFSCAGAHPTHQRICPCRDFIKGQVALCKDCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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