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Report for CCDS14896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14896.1 Public Mus musculus 1 Mrpl30 23 108 98 CCDS HistoryNCBI Gene:107734Re-query CCDS DB by CCDS ID:14896.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027256.11 ENSMUSP00000027256.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027256.11Link to Ensembl Protein Viewer:ENSMUSP00000027256.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027256Re-query CCDS DB by Protein ID:ENSMUSP00000027256
Original member Current member EBI ENSMUST00000193673.5 ENSMUSP00000141654.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193673.5Link to Ensembl Protein Viewer:ENSMUSP00000141654.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193673Re-query CCDS DB by Protein ID:ENSMUSP00000141654
Original member Current member EBI ENSMUST00000195373.1 ENSMUSP00000141693.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195373.1Link to Ensembl Protein Viewer:ENSMUSP00000141693.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195373Re-query CCDS DB by Protein ID:ENSMUSP00000141693
Original member Current member NCBI NM_001356482.1 NP_001343411.1 Accepted alive Link to Nucleotide Sequence:NM_001356482.1Link to Protein Sequence:NP_001343411.1Re-query CCDS DB by Nucleotide ID:NM_001356482Re-query CCDS DB by Protein ID:NP_001343411Link to BLAST:NP_001343411.1
Original member Current member NCBI NM_027098.3 NP_081374.1 Accepted alive Link to Nucleotide Sequence:NM_027098.3Link to Protein Sequence:NP_081374.1Re-query CCDS DB by Nucleotide ID:NM_027098Re-query CCDS DB by Protein ID:NP_081374Link to BLAST:NP_081374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343411.1 160 Q9D7N6 160 100% 0 0
NP_081374.1 160 Q9D7N6 160 100% 0 0

Chromosomal Locations for CCDS 14896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37893965 37894015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37895330 37895410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37897688 37897834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37898061 37898264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGCTGGGGTTCTGCGCTCCGCGTTCCCGAGGCCTCCATGCAGACTGCAGACTGTGAAGAAAGGTGCAG
AATCTCTCATTGGTACAGAATGGATTCGTCACAAATTTACCAAATCAAGAATTCCAGATAAAGTGTTTCA
GCCTAAACCTGAAGATCATGAAAAGTATGGTGGGGACCCCCAGAACCCTCACAAACTGCACATTGTCACA
AGAATAAGAAGTACAAAGAGGCGTCCATACTGGGAAAAAGATACCATCAAGATGCTTGGACTACAGAAGG
CACACAGCCCTCAAATTCACAAGAACATCCCATCGGTGAATGCAAAGCTGAAAGTGGTTAAACACTTGAT
ACGCATCCAGCCTCTGAAGCTGCCACAGGGACTTCCCACAGAAGAGACCATGTCCAGCACATGCCTCAAG
AGCACTGGGGAGTTGGTCGTGCAGTGGCATCTGAAGCCTGTGGAGCAGGAAGCGAAGTCCTGA

Translation (160 aa):
MAGVLRSAFPRPPCRLQTVKKGAESLIGTEWIRHKFTKSRIPDKVFQPKPEDHEKYGGDPQNPHKLHIVT
RIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQPLKLPQGLPTEETMSSTCLK
STGELVVQWHLKPVEQEAKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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