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Report for CCDS14910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14910.1 Public Mus musculus 1 Il1rl2 23 108 98 CCDS HistoryNCBI Gene:107527Re-query CCDS DB by CCDS ID:14910.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14910.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095020.8 ENSMUSP00000092630.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095020.8Link to Ensembl Protein Viewer:ENSMUSP00000092630.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095020Re-query CCDS DB by Protein ID:ENSMUSP00000092630
Original member Current member EBI ENSMUST00000194296.5 ENSMUSP00000142248.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194296.5Link to Ensembl Protein Viewer:ENSMUSP00000142248.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194296Re-query CCDS DB by Protein ID:ENSMUSP00000142248
Original member Current member NCBI NM_001356478.1 NP_001343407.1 Accepted alive Link to Nucleotide Sequence:NM_001356478.1Link to Protein Sequence:NP_001343407.1Re-query CCDS DB by Nucleotide ID:NM_001356478Re-query CCDS DB by Protein ID:NP_001343407Link to BLAST:NP_001343407.1
Original member Current member NCBI NM_133193.4 NP_573456.1 Accepted alive Link to Nucleotide Sequence:NM_133193.4Link to Protein Sequence:NP_573456.1Re-query CCDS DB by Nucleotide ID:NM_133193Re-query CCDS DB by Protein ID:NP_573456Link to BLAST:NP_573456.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343407.1 574 Q9ERS7 574 100% 0 0
NP_573456.1 574 Q9ERS7 574 100% 0 0

Chromosomal Locations for CCDS 14910.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40326495 40326558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40327372 40327606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40328971 40329169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40343028 40343190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40345806 40345877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40350936 40351065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40351762 40351898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40356819 40356962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40363192 40363353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40365027 40365445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGGGGTTACATCTTTGCTCTTCTGTGGGGTGTTTTTCCTGCTTCTGCTTTTCGTGGCAGCAGATACGT
GTGAGGACATTTTTATGCACAATGTGATAATTTCAGAGGGCCAGCCTTTTCCTTTCAACTGCACATACCC
GCCAGAAACAAACGGGGCAGTAAATCTGACATGGTACAAAACACCTAGCAAAAGCCCAGTATCTAACAAC
AGACACCTTAGAGTTCACCAGGACCAGACCTGGATCTTGTTTCTTCCATTGACACTGGAGGACTCCGGTA
TCTATCAGTGTGTTATAAGGAATGCCCACAACTGCTACCAAATAGCTGTGAACCTAACCGTTTTAAAAAA
CCACTGGTGTGACTCTTCCATGGAGGGGAGTCCCGTAAATTCACCAGATGTGTACCAGCAAATATTACCC
ATAGGAAAATCGGGCAGTCTGAATTGTCATCTCTACTTCCCAGAAAGTTGTGCTTTGGATTCAATAAAAT
GGTATAAGGGTTGTGAAGAGATTAAAGCGGGGAAAAAGTACAGCCCTTCAGGAGCAAAGCTTCTTGTGAA
CAACGTTGCTGTGGAGGACGGCGGGAGCTATGCGTGCTCAGCCAGACTGACTCACTTGGGGAGACACTTC
ACCATTAGAAACTACATTGCTGTGAACACCAAGGAAGTTGAGTATGGAAGAAGGATCCCTAACATCACGT
ATCCAAAGAACAACTCCATTGAAGTTCCACTTGGCTCCACCCTCATCGTGAACTGCAATATAACAGACAC
GAAGGAGAATACAAACCTGAGGTGCTGGAGAGTCAACAACACCCTGGTGGATGACTACTACAAAGACTCC
AAACGCATCCAGGAAGGAATCGAAACCAATGTGTCCTTGAGGGATCAAATTCGGTACACAGTGAACATAA
CATTCTTAAAAGTGAAAATGGAGGACTACGGCCGTCCTTTCACGTGTCATGCTGGAGTGTCCGCAGCCTA
CATCATTCTGATATACCCAGTTCCAGACTTCAGGGCTTACCTCTTAGGAGGGCTTATGGCGTTCCTACTT
CTGGTTGTATCTGTTCTGTTCATCTACAACAGCTTTAAGATCGACATCATGCTTTGGTACAGAAGCGCCT
TCCACACTGCCCAGGCTCCAGATGATGAGAAGCTGTATGATGCCTATGTCTTATACCCCAAGTACCCGAG
AGGAAGCCAGGGCCATGATGTAGACACACTGGTACTGAAGATCTTGCCCGAGGTGCTGGAGAAACAGTGT
GGATATAAGTTATTTATATTTGGCAGGGATGAATTCCCTGGACAAGCTGTGGCCAGCGTCATTGATGAAA
ACATTAAGCTGTGTAGGAGGCTGATGGTCTTTGTGGCACCAGAGTCGTCTAGCTTCGGCTTTCTAAAGAA
CTTGTCAGAAGAACAAATTGCCGTCTACAATGCCCTCATCCAGCATGGCATGAAGGTCATTCTGATCGAA
CTGGAGAAAGTCAAAGACTACAGCACCATGCCCGAGTCCATTCAGTATATCCGACAGAAGCACGGGGCCA
TCCAATGGGATGGGGACTTCACAGAGCAGTCACAGTGTGCCAAGACCAAGTTCTGGAAGAAAGTGAGATA
CCATATGCCACCCAGGAGGTATCCAGCATCTTCCCCAGTCCAGCTGCTGGGACACATACCCTGCAATTGC
AAGGCAGGCAAATGCAATGCTGCCACAGGGCTCATAACTCCCTGA

Translation (574 aa):
MGVTSLLFCGVFFLLLLFVAADTCEDIFMHNVIISEGQPFPFNCTYPPETNGAVNLTWYKTPSKSPVSNN
RHLRVHQDQTWILFLPLTLEDSGIYQCVIRNAHNCYQIAVNLTVLKNHWCDSSMEGSPVNSPDVYQQILP
IGKSGSLNCHLYFPESCALDSIKWYKGCEEIKAGKKYSPSGAKLLVNNVAVEDGGSYACSARLTHLGRHF
TIRNYIAVNTKEVEYGRRIPNITYPKNNSIEVPLGSTLIVNCNITDTKENTNLRCWRVNNTLVDDYYKDS
KRIQEGIETNVSLRDQIRYTVNITFLKVKMEDYGRPFTCHAGVSAAYIILIYPVPDFRAYLLGGLMAFLL
LVVSVLFIYNSFKIDIMLWYRSAFHTAQAPDDEKLYDAYVLYPKYPRGSQGHDVDTLVLKILPEVLEKQC
GYKLFIFGRDEFPGQAVASVIDENIKLCRRLMVFVAPESSSFGFLKNLSEEQIAVYNALIQHGMKVILIE
LEKVKDYSTMPESIQYIRQKHGAIQWDGDFTEQSQCAKTKFWKKVRYHMPPRRYPASSPVQLLGHIPCNC
KAGKCNAATGLITP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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