NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26459.1 Public Mus musculus 13 Ssr1 23 108 98 CCDS HistoryNCBI Gene:107513Re-query CCDS DB by CCDS ID:26459.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021864.7 ENSMUSP00000021864.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021864.7Link to Ensembl Protein Viewer:ENSMUSP00000021864.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021864Re-query CCDS DB by Protein ID:ENSMUSP00000021864
Original member Current member NCBI NM_025965.4 NP_080241.3 Accepted alive Link to Nucleotide Sequence:NM_025965.4Link to Protein Sequence:NP_080241.3Re-query CCDS DB by Nucleotide ID:NM_025965Re-query CCDS DB by Protein ID:NP_080241Link to BLAST:NP_080241.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080241.3 286 Q9CY50 286 100% 0 0

Chromosomal Locations for CCDS 26459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 37979739 37979806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37983393 37983486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37985264 37985342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37985975 37986051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37987517 37987779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37989504 37989591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37991997 37992109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37994005 37994083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGAGACTCCTCCCCCGCCTGCTGCTGCTGTTCCTGCTGGCCTTTCCCGCCGCCGTGCTGCTCCGAGGCG
GCCCCGGAGGGTCATTAGCTTTGGCTCAAGATCCTACAGAAGATGAAGAAATAGTGGAAGATTCAATAAT
TGAAGATGAAGATGATGAAGCTGAAGTAGAAGAAGATGAACCCACAGATTTGGCAGAAGATAAAGAAGAG
GAGGATGTATCCAGTGAACCAGAAGCTTCACCCAGTGCAGACACAACTATTCTGTTTGTAAAAGGAGAAG
ATTTTCCGGCAAACAACATCGTGAAGTTCCTGGTTGGCTTTACAAACAAGGGGACAGAAGATTTTATTGT
TGAATCGCTAGATGCCTCGTTCCGTTATCCTCAGGACTACCAGTTTTACATCCAGAATTTCACAGCTCTT
CCTCTAAACACTGTAGTGCCACCCCAGCGGCAGGCAACTTTTGAGTATTCCTTCATCCCTGCAGAGCCGA
TGGGAGGACGACCCTTTGGTCTGGTTATCAATCTGAACTACAAAGATTTGAACGGCAATGTATTCCAGGA
TGCTGTCTTCAATCAGACGGTCACAGTTATTGAAAGAGAGGACGGGTTAGATGGAGAAACAATTTTTATG
TATATGTTCCTTGCTGGTCTTGGGCTTCTGGTTGTTGTTGGCCTTCATCAGCTCCTGGAATCTAGAAAGC
GCAAGAGACCCATACAGAAAGTAGAAATGGGTACCTCAAGTCAGAATGATGTTGACATGAGCTGGATTCC
TCAGGAGACTTTGAATCAGATCAATAAAGCTTCTCCCAGAAGGCAGCCCCGGAAGCGGGCGCAGAAGCGA
TCGGTGGGATCTGATGAGTAA

Translation (286 aa):
MRLLPRLLLLFLLAFPAAVLLRGGPGGSLALAQDPTEDEEIVEDSIIEDEDDEAEVEEDEPTDLAEDKEE
EDVSSEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTAL
PLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFM
YMFLAGLGLLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQETLNQINKASPRRQPRKRAQKR
SVGSDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH