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Report for CCDS50239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50239.1 Public Mus musculus 18 Slc39a6 23 108 98 CCDS HistoryNCBI Gene:106957Re-query CCDS DB by CCDS ID:50239.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070726.9 ENSMUSP00000064667.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070726.9Link to Ensembl Protein Viewer:ENSMUSP00000064667.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000070726Re-query CCDS DB by Protein ID:ENSMUSP00000064667
Original member Current member NCBI NM_139143.3 NP_631882.2 Accepted alive Link to Nucleotide Sequence:NM_139143.3Link to Protein Sequence:NP_631882.2Re-query CCDS DB by Nucleotide ID:NM_139143Re-query CCDS DB by Protein ID:NP_631882Link to BLAST:NP_631882.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631882.2 765 Q8C145 765 100% 0 0

Chromosomal Locations for CCDS 50239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24580925 24581077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24582317 24582507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24584020 24584100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24585126 24585503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24589747 24589852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24596266 24596484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24597743 24597912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24599230 24599413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24600815 24601630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2298 nt):
ATGGCCACAGATTTATCTGTAATCATGATCTTGACCTTTGCCCTTTGGGTTACAAGCCCCCTTCATGAAC
TACAATCAACAGCTGCTTTCTCTCAGACTACTGAGAAAATAAATTCAAATTGGGAACCTGGTGTTAATGT
TGACTTGGCAGTTACCATGCAGCGACACCATCTGCAGCAGCTATTCTACCGCTACGGAGAGAATGATTCC
TTGTCTGTTGAAGGCTTCAGAAAATTGCTTCAGAACATAGGCATAGATAAGATTAAAAGAGTCCATATAC
ACCATGACCACGAGCATCATGCTGACCACGAGCATCACTCGGACCATGAGCATCACTCGGACCACGAGCA
TCACTCGGACCACGAGCATCACTCGGACCACGAGCATCACTCGGACCACGAGCACCATTCCCACCGCAGT
CACACGGTTGCTGGTAAAAACAATCGGAAAGCCTTTTGTCCAGACCTTGACTCTGATAATTCAGGTAAAA
ATCCTAGAACTAGTCTAGGGAAAGGATCTCGCCCAGCAGAGCACATGAATGGTAGGAGGAACATCAAGGA
GAGTGCAAGCTCTAGTGAAGTGACCTCGGCGGTATACAACGCTGTCTCTGAAGGAACTCGCTTTGTAGAG
ACAATAGAGACTCCAAAACCTGGGAGACGCACCAAAGATGTAAACCCTTCTACCCCACCCAGCATCACGG
AGAAAAGCCGAGTGGGCCGGCTGAGTCGGCTAGCTAGGAAGAAAAGCAATGAGTCTGTGAGTGAGCCCAG
AAAGAGCTTTATGTATTCCAGAAACACAAATGACAATATTCAGGAGTGTTTCAATACAACCAAGCTGCTG
ACATCCCATGGCATGAGCATCCAGGCTCTGTTGAATGCAACGGAATTTAACTATCTCTGCCCAGCCATCA
TCAATCAAATTGATGCTCGGGCTTGTCTGATTCATACAGCAAGTGAGAAGAAGGCAGAAATCCCTCCAAA
GACCTATTCTTTACAAATAGCCTGGCTTGGTGGCTTCATAGCCATTTCCATCATCAGTTTCCTGTCTCTG
CTGGGAGTCATCTTGGTGCCACTCATGAACCGGGTATTTTTCAAGTTCCTGCTGAGCTTCCTCGTGGCGC
TGGCCGTCGGAACGCTGAGTGGCGATGCTCTGTTACATCTTCTCCCACACTCTCATGCAAGTCATCAGCA
CAGTCATAGCCATGAAGAGCCAGCGATGGAAATGAAAAGAGGCCCCCTGTTCAGCCACCTGTCGGCTCAG
AATATAGAAGAAAGCTCCTATTTTGATTCCACGTGGAAAGGTCTGACGGCTCTAGGGGGCTTATATTTCA
TGTTTCTTGTGGAACACGTACTCACACTGATCAAGCAATTTAAAGATAAGAAAAAGAAGAATCAAAAGAA
ACCTGAAAATGATGAGGATGTGGAGAGCAAGAAGCAGCTGTCCAAATACGACTCTCAGCTTTCCTCAAAT
GAAGAGAAGGTGGACCCAGGGGAACGACCTGAAAGCTATCTGCGAGCCGACTCCCAAGAGCCCTCCCCCT
TTGATTCCCAGCAGCCGACGATGTTGGAAGAGGAAGAGGTCATGATAGCCCATGCACACCCACAAGAAGT
CTACAATGAATATGTGCCCAGGGGCTGCAAGAACAAGTGCCATTCACACTTCCACGATACGCTGGGCCAG
TCCGACGACCTCATCCACCACCATCACGACTACCATCACATTCTGCACCACCACCACCACCAGAACCACC
ACCCTCACAGCCACAGCCAGCGCTACTCTCGAGAGGAGCTGAAGGACGCCGGCATTGCCACATTGGCCTG
GATGGTGATCATGGGCGACGGGCTGCACAATTTCAGTGACGGCCTTGCTATTGGTGCTGCCTTCACCGAG
GGTTTGTCCAGTGGGCTAAGCACCTCTGTCGCTGTGTTCTGTCATGAACTGCCTCATGAACTAGGTGACT
TTGCTGTTTTGCTAAAGGCTGGCATGACTGTCAAGCAGGCTGTGCTCTATAATGCTCTGTCAGCCATGTT
GGCCTACCTTGGAATGGCAACAGGGATATTCATCGGGCATTATGCAGAAAATGTTTCTATGTGGATATTC
GCACTCACTGCCGGCTTGTTCATGTATGTCGCTCTGGTTGACATGGTGCCTGAGATGTTGCACAATGATG
CTAGTGATCACGGATGCAGCCGTTGGGGATATTTCTTCCTGCAGAATGCTGGGATACTTCTCGGTTTTGG
AATTATGTTACTCATTTCCATATTTGAGCATAAAATTGTGTTTCGTATAAATTTCTAA

Translation (765 aa):
MATDLSVIMILTFALWVTSPLHELQSTAAFSQTTEKINSNWEPGVNVDLAVTMQRHHLQQLFYRYGENDS
LSVEGFRKLLQNIGIDKIKRVHIHHDHEHHADHEHHSDHEHHSDHEHHSDHEHHSDHEHHSDHEHHSHRS
HTVAGKNNRKAFCPDLDSDNSGKNPRTSLGKGSRPAEHMNGRRNIKESASSSEVTSAVYNAVSEGTRFVE
TIETPKPGRRTKDVNPSTPPSITEKSRVGRLSRLARKKSNESVSEPRKSFMYSRNTNDNIQECFNTTKLL
TSHGMSIQALLNATEFNYLCPAIINQIDARACLIHTASEKKAEIPPKTYSLQIAWLGGFIAISIISFLSL
LGVILVPLMNRVFFKFLLSFLVALAVGTLSGDALLHLLPHSHASHQHSHSHEEPAMEMKRGPLFSHLSAQ
NIEESSYFDSTWKGLTALGGLYFMFLVEHVLTLIKQFKDKKKKNQKKPENDEDVESKKQLSKYDSQLSSN
EEKVDPGERPESYLRADSQEPSPFDSQQPTMLEEEEVMIAHAHPQEVYNEYVPRGCKNKCHSHFHDTLGQ
SDDLIHHHHDYHHILHHHHHQNHHPHSHSQRYSREELKDAGIATLAWMVIMGDGLHNFSDGLAIGAAFTE
GLSSGLSTSVAVFCHELPHELGDFAVLLKAGMTVKQAVLYNALSAMLAYLGMATGIFIGHYAENVSMWIF
ALTAGLFMYVALVDMVPEMLHNDASDHGCSRWGYFFLQNAGILLGFGIMLLISIFEHKIVFRINF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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