NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27769.1 Public Mus musculus 15 Prickle1 23 108 98 CCDS HistoryNCBI Gene:106042Re-query CCDS DB by CCDS ID:27769.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27769.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048982.10 ENSMUSP00000049204.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048982.10Link to Ensembl Protein Viewer:ENSMUSP00000049204.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000048982Re-query CCDS DB by Protein ID:ENSMUSP00000049204
Original member Current member EBI ENSMUST00000109255.2 ENSMUSP00000104878.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109255.2Link to Ensembl Protein Viewer:ENSMUSP00000104878.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109255Re-query CCDS DB by Protein ID:ENSMUSP00000104878
Original member Current member NCBI NM_001033217.5 NP_001028389.1 Accepted alive Link to Nucleotide Sequence:NM_001033217.5Link to Protein Sequence:NP_001028389.1Re-query CCDS DB by Nucleotide ID:NM_001033217Re-query CCDS DB by Protein ID:NP_001028389Link to BLAST:NP_001028389.1
Original member Current member NCBI NM_001364846.1 NP_001351775.1 Accepted alive Link to Nucleotide Sequence:NM_001364846.1Link to Protein Sequence:NP_001351775.1Re-query CCDS DB by Nucleotide ID:NM_001364846Re-query CCDS DB by Protein ID:NP_001351775Link to BLAST:NP_001351775.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028389.1 832 Q3U5C7 832 100% 0 0
NP_001351775.1 832 Q3U5C7 832 100% 0 0

Chromosomal Locations for CCDS 27769.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 93500447 93501303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93502960 93503826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93505029 93505215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93508553 93508756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93509228 93509365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93510671 93510784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 93512450 93512581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2499 nt):
ATGCCTTTGGAGATGGAACCGAAAATGAGCAAACTGGTCTTCGGGTGCCAGAGAAGCTCCACATCAGATG
ATGATTCCGGCTGTGCACTTGAAGAGTATGCATGGGTCCCACCGGGCCTCAGGCCCGAGCAGATCCAGCT
CTATTTCGCATGCTTGCCAGAGGAAAAGGTTCCTTATGTTAACAGCCCTGGGGAGAAACACAGGATTAAA
CAGCTCCTGTACCAGTTGCCTCCACACGATAACGAGGTGCGGTACTGCCAGTCTTTGAGCGAAGAAGAGA
AGAAGGAGCTGCAGGTGTTCAGTGCTCAGAGGAAGAAAGAAGCTCTGGGGAGAGGAACCATCAAACTCTT
GTCCAGAGCTGTGATGCACGCCGTGTGTGAGCAGTGTGGGCTGCAGATGAATGGAGGGGAGGTGGCCGTG
TTCGCCTCCCGTGCAGGACCTGGAGTATGCTGGCACCCGTCCTGCTTTGTCTGCTTCACGTGTAATGAAC
TACTGGTCGACCTCATCTATTTCTATCAGGATGGAAAAATCCACTGTGGCAGGCACCACGCTGAACTGCT
CAAGCCTCGGTGCTCAGCCTGTGATGAGATCATTTTTGCTGACGAGTGCACGGAAGCCGAGGGTCGCCAC
TGGCACATGAAGCATTTCTGCTGTCTGGAATGTGAGACAGTCCTGGGAGGGCAGAGATATATCATGAAGG
ACGGCCGCCCCTTCTGCTGTGGCTGCTTCGAGTCTCTCTACGCTGAGTACTGCGAAACCTGTGGGGAGCA
TATTGGTGTGGACCACGCACAGATGACCTACGACGGGCAGCACTGGCACGCCACAGAGGCCTGCTTTTCC
TGTGCGCAGTGTAAGGCCTCGTTGCTGGGATGCCCCTTCCTCCCGAAACAAGGTCAGATTTACTGCTCCA
AGACCTGCAGCCTTGGGGAAGACATCCACGCCTCTGACTCCTCGGACTCCGCCTTCCAGTCAGCCAGATC
CAGAGACTCTCGCAGGAGCGTGAGGATGGGCAGAAGCAGCCGCTCCGCCGACCAGTGCCGACAGTCTCTT
CTCTTGTCTCCCGCCCTGAACTACAAGTTCCCGGGTCTCTCCGGCAACGCTGACGACACCCTTTCCCGGA
AGCTGGATGACGTGAGCCTCGCCAGCAGGCAGGGAGCAGGTTTCGCTAACGAGGAATTCTGGAAAGCCAG
AGTGGAGCAGGAAGCCTCCGAAGACCCCGAAGAATGGGCTGAGCATGAAGATTATATGACGCAGCTCCTC
CTCAAGTTCGGCGACAAAAACCTCTTCCAGCAGCAGAGCAGCGAGGTGGATCCGAGAGCCAGCGAGCACT
GGATACCCGACAACATGGTTACGAATAAGCCCGAGGTAAAGCCGAATCACCAGGGCCTCGCGAGTAAAAA
GTATCAGTCTGATATGTACTGGGCCCAGTCCCAAGACGGGCTGGGTGACTCTGCCTACGGCAGCCATCCA
GGCCCCGCCAGCAGCCGCAGGCTGCAAGAGCTAGATCTGGACCACGGTGCTGCGGGATATACTCATGACC
AAAGCCAGTGGTATGAAGACTCCCTGGAGTGTCTATCTGACTTGAAACCAGAACAGAGTATCCGGGATTC
TATGGATTCTTTGGCGTTGTCCAACATCACAGGGGCATCAGTGGATGGAGAAAGCAAGCCAAGACCGTCA
TTATATTCTCTCCAAAACTTTGAGGAGATAGAGGCAGAAGATTGTGAGAAAATGAGCAATATGGGAACTC
TGAACTCTTCCATGCTGCACAGGAGTGCAGAATCCTTACAAAGTCTGAACTCAGGGCTGTGCCCAGAAAA
AATTCTACCTGAGGAAAAACCAGCACACCTGCCGGTGCTCAGGAGATCCAAGTCCCAGTCCCGACCACAG
CAGGTCAAATTTTCAGATGACGTCATTGACAACGGAAGCTACGACATCGAAATCCGGCAGCCTCCCATGA
GCGAACGGACTCGGAGACGGGCGTATCACTTTGAAGAGAGGGGATCCAGGCCTCACCACCATCGCCACCG
GAGAAGCAGAAAGTCTCGGTCCGACAACGCCCTGAACCTGGTCACGGAAAGGAAGTACTCCGCCAAGGAC
AGACTTCGGCTGTACACCCCCGATAACTATGAGAAATTCATACAGAATAAAAGCGCCCGGGAGCTCCAAG
CCTACATGCAGAACGCCAACCTCTATAGCCAGTATGCCCATGCCACGTCTGATTACGCCCTGCAGAACCC
AGGGATGAACCGGTTTCTGGGGCTCTGCGGCGAGGACGACGACTCGTGGTGTTCGTCCTCCACGTCCTCC
TCCGACTCAGAAGAAGAAGGCTATTTCCTTGGCCAGCCGATCCCTCAGCCACGGCCACAGAGATTCACCT
ACTATACAGATGACCTTTCTAGCCCGGCTTCCGCACTGCCCACCCCACAGTTTACTCAGAGGACAACTAA
ATCCAAGAAGAAAAAAGGACACAAGGGCAAAAACTGTATCATTTCTTAA

Translation (832 aa):
MPLEMEPKMSKLVFGCQRSSTSDDDSGCALEEYAWVPPGLRPEQIQLYFACLPEEKVPYVNSPGEKHRIK
QLLYQLPPHDNEVRYCQSLSEEEKKELQVFSAQRKKEALGRGTIKLLSRAVMHAVCEQCGLQMNGGEVAV
FASRAGPGVCWHPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHAELLKPRCSACDEIIFADECTEAEGRH
WHMKHFCCLECETVLGGQRYIMKDGRPFCCGCFESLYAEYCETCGEHIGVDHAQMTYDGQHWHATEACFS
CAQCKASLLGCPFLPKQGQIYCSKTCSLGEDIHASDSSDSAFQSARSRDSRRSVRMGRSSRSADQCRQSL
LLSPALNYKFPGLSGNADDTLSRKLDDVSLASRQGAGFANEEFWKARVEQEASEDPEEWAEHEDYMTQLL
LKFGDKNLFQQQSSEVDPRASEHWIPDNMVTNKPEVKPNHQGLASKKYQSDMYWAQSQDGLGDSAYGSHP
GPASSRRLQELDLDHGAAGYTHDQSQWYEDSLECLSDLKPEQSIRDSMDSLALSNITGASVDGESKPRPS
LYSLQNFEEIEAEDCEKMSNMGTLNSSMLHRSAESLQSLNSGLCPEKILPEEKPAHLPVLRRSKSQSRPQ
QVKFSDDVIDNGSYDIEIRQPPMSERTRRRAYHFEERGSRPHHHRHRRSRKSRSDNALNLVTERKYSAKD
RLRLYTPDNYEKFIQNKSARELQAYMQNANLYSQYAHATSDYALQNPGMNRFLGLCGEDDDSWCSSSTSS
SDSEEEGYFLGQPIPQPRPQRFTYYTDDLSSPASALPTPQFTQRTTKSKKKKGHKGKNCIIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH