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Report for CCDS40780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40780.1 Public Mus musculus 9 Ptpn23 23 108 98 CCDS HistoryNCBI Gene:104831Re-query CCDS DB by CCDS ID:40780.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040021.11 ENSMUSP00000039580.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040021.11Link to Ensembl Protein Viewer:ENSMUSP00000039580.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040021Re-query CCDS DB by Protein ID:ENSMUSP00000039580
Original member Current member NCBI NM_001081043.1 NP_001074512.1 Accepted alive Link to Nucleotide Sequence:NM_001081043.1Link to Protein Sequence:NP_001074512.1Re-query CCDS DB by Nucleotide ID:NM_001081043Re-query CCDS DB by Protein ID:NP_001074512Link to BLAST:NP_001074512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074512.1 1692 Q6PB44-1 1692 100% 0 0

Chromosomal Locations for CCDS 40780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110385253 110385732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110385814 110385927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110386018 110386156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110386245 110386349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110386454 110386638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110386731 110388651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110388741 110388920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110389012 110389163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110389241 110389395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110389473 110389790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110390043 110390188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110390470 110390535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110390630 110390744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110390851 110390930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110391044 110391102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110391209 110391265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110391634 110391681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110391767 110391898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110391982 110392062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110392485 110392616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110392703 110392752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110393371 110393447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110393701 110393828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110398121 110398195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110408034 110408117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5079 nt):
ATGGAGGCCGTGCCCCGGATGCCCATGATCTGGCTGGACCTGAAGGAGGCCGGTGACTTTCACTTCCAGT
CT
GCGGTGAAGAAGTTTGTCCTGAAGAATTATGGAGAGAACCCAGAAGCCTACAACGAGGAACTAAAGAA
G
CTGGAATTACTCAGACAGAATGCTATTCGCGTTGCCCGGGACTTTGAGGGCTGCAGTGTTCTTCGAAAG
TAC
CTTGGCCAGCTACACTACCTACAGAGTCGGGTGCCCATGGGCTCAGGCCAGGAGGCTGCTGTAGCTG
TC
ACCTGGACTGAGATCTTCTCGGGCAAGTCTGTGTCCCATGAAGACATCAAGTACGAGCAGGCCTGTAT
T
CTCTACAACCTCGGTGCACTGCACTCCATGCTGGGGGCTATGGACAAGCGGGTGTCTGAGGAGGGCATG
AAA
GTCTCCTGCACCCACTTCCAGTGTGCAGCAGGCGCCTTTGCCTACCTGCGTGAACACTTCCCACAGG
CC
TTCAGTGTGGACATGAGTCGCCAGATCCTTACGCTCAATGTCAACCTCATGCTGGGCCAGGCTCAGGA
G
TGCCTGTTGGAGAAGTCCATGTTGGACAACCGGAAGAGCTTTCTAGTGGCCCGCATCAGCGCACAGGTG
GTA
GATTACTATAAGGAGGCATGCCGGGCCTTGGAAAACCCTGATACTGCCTCCCTGCTGGGCCGTATCC
AG
AAAGACTGGAAGAAACTTGTCCAAATGAAGATCTACTACTTTGCGGCTGTGGCTCATCTACACATGGG
G
AAGCAGGCTGAGGAGCAACAGAAATTTGGGGAACGGGTGGCCTACTTCCAGAGTGCCCTGGACAAGCTT
AAT
GAAGCCATCAAGTTGGCCAAGGGCCAGCCCGACACTGTGCAAGATGCACTTCGCTTTGCTATGGATG
TC
ATCGGGGGCAAATATAATTCTGCCAAGAAGGACAATGACTTTATCTACCATGAGGCTGTGCCAGCACT
G
GATACACTCCAGCCTGTGAAAGGAGCTCCCTTGGTGAAGCCCTTGCCAGTAAACCCCACAGACCCAGCT
GTT
ACAGGTCCTGACATCTTTGCCAAGTTGGTGCCCATGGCTGCCCATGAGGCCTCATCACTGTACAGTG
AG
GAGAAGGCCAAACTGCTTCGGGAGATGCTGGCCAAAATTGAAGATAAGAATGAGGTCCTAGATCAGTT
C
ATGGACTCCATGCAGCTGGACCCTGAGACAGTGGACAACTTGGATGCCTACAACCATATCCCCCCCCAG
CTC
ATGGAGAAGTGTGCGGCACTCAGCGTCCGGCCTGACACTGTCAAGAACCTTGTCCAGTCTATGCAGG
TG
CTGTCAGGGGTGTTCACGGATGTGGAGGCCTCCCTGAAGGACATCAGGGATCTACTGGAGGAAGATGA
G
CTGCAAGAGCAGAAATTGCAGGAGACCCTGGGCCAGGCCGGGGCTGGCCCTGGCCCCTCTGTTGCCAAG
GCT
GAGCTTGCAGAGGTGAGGCGAGAATGGGCCAAGTACATGGAAGTGCATGAAAAGGCTTCCTTCACCA
AC
AGTGAGCTGCATCGTGCTATGAACCTGCATGTTGGTAACTTGCGCCTGCTCAGTGGACCACTGGACCA
G
GTGCGGGCTGCCCTACCCACACCAGCCCTCACCCCAGAGGACAAAGCCGTGCTGCAAAACCTAAAGCGC
ATC
CTCGCCAAGGTGCAGGAGATGCGGGACCAGCGTGTGTCCTTGGAACAGCAGCTCCGAGAGCTGATCC
AG
AAGGATGACATCACTGCCTCTCTGGTCACCACTGACCACTCAGAGATGAAGAAACTGTTTGAGGAGCA
G
CTGAAGAAGTATGACCAGCTGAAGGTCTACCTGGAGCAGAACCTGGCCGCCCAGGACAATGTCCTCCGT
GCC
CTGACTGAGGCCAACGTGCAGTATGCAGCCGTGCGGCGGGTGCTTAGTGAGCTGGACCAAAAGTGGA
AC
TCCACACTACAGACCCTGGTAGCATCCTATGAGGCCTATGAGGACCTGATGAAGAAGTCCCAAGAAGG
C
AAGGACTTTTATGCAGACTTGGAAAGCAAGGTAGCTACCCTTCTGGAACGGGCACAATCCATCTGTCGT
GCC
CAAGAGGCCGCTCGCCAGCAGCTCCTGGACAGAGAGCTGAAGAAGAAGGCACCACCACCTCGGCCTA
CA
GCCCCAAAGCCATTGCTGTCCCGCCGTGAGGAGGGGGAGGCAGTGGAGGCTGGAGACACACCTGAGGA
G
CTGCGCAGCTTGCCCCCTGACATGATGGTTGGCCCACGGCTACCTGACCCATTCCTAGGAACTACTGCC
CCT
CTCCACTTTTCTCCTGGCCCCTTCCCTAGTTCCACAGGCCCAGCAACCCACTATCTCTCAGGACCCT
TA
CCCCCTGGAACTTATTCAGGCCCCACTCAACTGATGCAGCCTAGGGCTGCAGTTCCCATGGCACCTGC
A
ACGGTCCTCTACCCAGCCCCTGCCTATACATCGGAGTTGGGCCTCGTACCCAGATCCTCTCCCCAGCAT
GGA
ATTGTAAGCAGTCCCTATGCAGGGGTAGGGCCACCCCAACCAGTTGTAGGTCTTCCCTCTGCTCCAC
CT
CCCCAGCTCTCAGGACCCGAGTTAGCCATGACAGTTCGGCCAGCTACCACCACAGTAGATAGTGTCCA
A
GCCCCTATCTCTAGCCACACGGCACCACGGCCAAACCCTACCCCTGCTCTTCCCCAGCCCTGCTTTCCA
GTG
CCTCAGCCTGTACCTCAATCTGTTCCCCAACCACAGCCTCTGCCTGTACCCTATACTTATTCTATAG
GG
ACCAAGCAGCCTCTGCCTGCACCCTATACTTACTCTATAGGGACCAAGCAGCACCTCACTGGCCCTCT
A
CCACAGCATCAGTTTCCTCCTGGGATCCCCACAGGCTTTCCAGTCCCCAGGACTGGGCCCCAGGCCCAG
GCC
CAGCCCCAACCCCAGCCCCAGCCCCAGCCTCAGCCTCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCC
AG
TCCCAGTCCCAGCCCCAGCCCCAGCCCCAGCCTCAGCCCCAACGGCCAGCATTTGGGCCACAACCCAC
A
CAACAGCCCCTTCCATTCCAGCATCCACATCTCTTCCCATCTCAGGCCCCAGGGATTCTTCCACCACCA
CCA
CCAACACCCTACCATTTTACTCCTCAGCCTGGTGTCTTGGGACAACCACCACCCACCCTACACACCC
AG
CTCTATCCAGGCCCATCTCAAGACCCTCTTCCCCCACATTCAGGGGCTCTGCCTTTCCCCAGCCCTGG
G
CCCCCTCATCCTCACCCCACCCTGGCATATGGCCCTGCCCCTTCCCCTAGGCCCCTTGGTCCTCAGGCA
ACC
CCTGTCTCCATTCGAGGCCCCCCACCAGCCAGTCAGCCCACCCCTAGTCCACACTTGGTGCCTTCAC
CT
GCCCCATCACCAGGGCCTGGCCCAGTACCTTCAAGACCTCCAACAGCCGAGCCACCACCTTGTTTGCG
C
CGAGGTGCTGCAGCTGCAGACCTTCTGTCTTCTAGCCCTGAGAGCCAGCATGGAGGTACCCAGCCTCCT
GGG
GGTGGGCAGCCCTTGCTACAGCCTACCAAGGTAGATGCAGCTGAGGGCCGTCGGCCACAGGCCCTGC
GG
CTAATTGAGCAGGACCCCTATGAACATCCCGAGAGGCTGCAGCAGTTGCAGCAGGAGCTGGAGGCCTT
T
CGGGGCCAGCTGGGGGATGCAGGAGCACTGGATGCCATCTGGAGAGAGTTGCAAGAGGCACAGGAACAC
GAT
GCCCGAGGTCGATCCATTGCCATTGCCCGCTGCTACTCCCTGAAGAACCGGCACCAGGATGTCATGC
CG
TATGACAGCAACCGTGTGGTGCTGCGCTCAGGCAAAGATGATTATATTAATGCTAGCTGTGTGGAGGG
G
CTCTCGCCATACTGTCCACCCTTAGTGGCCACCCAGGCTCCGCTGCCTGGCACAGCTGCAGATTTCTGG
CTC
ATGGTGCATGAACAGAAAGTGTCAGTCATTGTCATGCTGGTGTCTGAGGCTGAGATGGAAAAGCAAA
AG
GTGGCGCGTTACTTCCCCACAGAGAGGGGCCAGCCCATGGTGCATGGAGCCCTGAGCGTGGCACTGAG
C
AGTATTCGTACTACTGAGACCCATGTGGAGCGAGTGCTGAGTCTGCAGTTCCGGGATCAGAGCCTCAAG
CGC
TCTCTTGTGCACCTCCATTTCCCTACTTGGCCTGAGTTAGGCCTGCCAGACAGCCCTGGCAATCTGC
TG
CGCTTCATCCAGGAGGTGCATGCACATTATTTGCACCAGCGACCCCTGCACACACCTATTGTCGTACA
C
TGCAGCTCTGGGGTGGGCCGCACAGGAGCCTTCGCGTTGCTCTATGCAGCCGTGCAGGAGGTGGAGGCT
GGG
AATGGGATTCCAGAGCTGCCCCAGCTGGTGAGGCGGATGCGGCAGCAGAGGAAACACATGCTGCAGG
AA
AAACTTCACCTCAAGTTCTGCCATGAGGCGTTGGTGAGACATGTGGAGCAGGTCCTACAGCGCCATGG
T
GTGCCTCCTCCTGGCAAGCCTGTGGCCAGTGTGAACATCAGCCAGAAGAACCACCTTCCTCAGGACTCC
CAG
GATCTGGTCCTTGGTGGAGACGTGCCCATCAGCTCCATTCAGGCTACCATTGCCAAGCTCAGCATCC
GG
CCCCTAGGTGGCTTGGATTCCCCAGCTGCCAGCCTCCCAGGCCTTGTAGAACCCCCAGGTCTTCCACC
A
GCTAGCCTTCCAGAGTCTACCCCTGTCCCATCTTCCTCGCCTCCCCCACTCTCTTCACCTCTGCCTGAA
GCC
CCCCAGCCAGAGGAGGAGCCGTCAGTGCCTGAAGCCCCCAGCTTAGGGCCCCCCTCGTCATCCCTGG
AG
CTGTTGGCCTCTCTGACTCCAGAAGCATTTTCACTGGACAGTTCTTTACGGGGAAAGCAGCGGATGAG
C
AAGCAGAACTTTCTGCAGGCCCACAACGGGCAGGGTCTAAGGGCTGCCCAGCCTACGGATGACCCCCTC
AGC
CTCCTGGATCCACTCTGGACACTCAACAAGACCTGA


Translation (1692 aa):
MEAVPRMPMIWLDLKEAGDFHFQSAVKKFVLKNYGENPEAYNEELKKLELLRQNAIRVARDFEGCSVLRK
Y
LGQLHYLQSRVPMGSGQEAAVAVT
WTEIFSGKSVSHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGM
K
VSCTHFQCAAGAFAYLREHFPQAFSVDMSRQILTLNVNLML
GQAQECLLEKSMLDNRKSFLVARISAQV
V
DYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAH
LHMGKQAEEQQKFGERVAYFQSALDKL
N
EAIKLAK
GQPDTVQDALRFAMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVKPLPVNPTDPA
V
TGPDIFAKLVPMAAHEASSLY
SEEKAKLLREMLAKIEDKNEVLDQFMDSMQLDPETVDNLDAYNHIPPQ
L
MEKCAALSVRPDTVKNLVQSMQ
VLSGVFTDVEASLKDIRDLLEEDELQEQKLQETLGQAGAGPGPSVAK
A
ELAEVRREWAKYMEVHEKASFTNSELHRAMNLHVGNLRLLSGPLDQVRAALPTPALTP
EDKAVLQNLKR
I
LAKVQEMRDQRVSLEQQLRELIQKDDITASLVTTDHSEMK
KLFEEQLKKYDQLKVYLEQNLAAQDNVLR
A
LTEANVQYAAVRRVLSELDQ
KWNSTLQTLVASYEAYEDLMKKSQEGKDFYADLESKVATLLERAQSICR
A
QEAARQQLLD
RELKKKAPPPRPTAPKPLLSRREEGEAVEAGDTPEELRSLPPDMMVGPRLPDPFLGTTA
P
LHFSPGPFPSSTGPATHYLSGPLPPGTYSGPTQLMQPRAAVPMAPATVLYPAPAYTSELGLVPRSSPQH
G
IVSSPYAGVGPPQPVVGLPSAPPPQLSGPELAMTVRPATTTVDSVQAPISSHTAPRPNPTPALPQPCFP
V
PQPVPQSVPQPQPLPVPYTYSIGTKQPLPAPYTYSIGTKQHLTGPLPQHQFPPGIPTGFPVPRTGPQAQ
A
QPQPQPQPQPQPQPQPQPQPQPQSQSQPQPQPQPQPQRPAFGPQPTQQPLPFQHPHLFPSQAPGILPPP
P
PTPYHFTPQPGVLGQPPPTLHTQLYPGPSQDPLPPHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQA
T
PVSIRGPPPASQPTPSPHLVPSPAPSPGPGPVPSRPPTAEPPPCLRRGAAAADLLSSSPESQHGGTQPP
G
GGQPLLQPTKVDAAEGRRPQALRLIEQDPYEHPERLQQLQQELEAFRGQLGDAGALDAIWRELQEAQEH
D
ARGRSIAIARCYSLKNRHQDVMPYDSNRVVLRSGKDDYINASCVEGLSPYCPPLVATQAPLPGTAADFW
L
MVHEQKVSVIVMLVSEAEMEK
QKVARYFPTERGQPMVHGALSVALSSIRTTETHVERVLSLQFRDQSLK
R
SLVHLHFPTWPE
LGLPDSPGNLLRFIQEVHAHYLHQRPLHTPIVVHCSSGVGRTGAFALLYAAVQEVEA
G
NGIPELPQLVRRMRQQRKHMLQEK
LHLKFCHEALVRHVEQVLQRHGVPPPGKPVASVNISQKNHLPQDS
Q
DLVLGGDVPISSIQATIAKLSIRPLGGLDSPAASLPGLVEPPGLPPASLPESTPVPSSSPPPLSSPLPE
A
PQPEEEPSVPEAPSLGPPSSSLELLASLTPEAFSLDSSLRGKQRMSKQNFLQAHNGQGLRAAQPTDDPL
S
LLDPLWTLNKT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser