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Report for CCDS36025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36025.1 Public Mus musculus 10 Arl1 23 108 98 CCDS HistoryNCBI Gene:104303Re-query CCDS DB by CCDS ID:36025.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116234.8 ENSMUSP00000111942.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116234.8Link to Ensembl Protein Viewer:ENSMUSP00000111942.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116234Re-query CCDS DB by Protein ID:ENSMUSP00000111942
Original member Current member NCBI NM_025859.3 NP_080135.2 Accepted alive Link to Nucleotide Sequence:NM_025859.3Link to Protein Sequence:NP_080135.2Re-query CCDS DB by Nucleotide ID:NM_025859Re-query CCDS DB by Protein ID:NP_080135Link to BLAST:NP_080135.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080135.2 181 P61211 181 100% 0 0

Chromosomal Locations for CCDS 36025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88731561 88731564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88733543 88733680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88735898 88735979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88737091 88737202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88741907 88742085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88743023 88743053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGGTGGCTTTTTCTCAAGTATTTTTTCCAGTCTCTTTGGAACCAGAGAAATGAGGATTTTAATTTTGG
GATTAGATGGTGCTGGAAAAACAACAATTTTGTACAGGTTACAGGTTGGAGAAGTTGTTACTACTATTCC
CACTATTGGATTTAATGTGGAGACGGTGACATACAAAAATCTCAAATTCCAAGTTTGGGACTTAGGAGGA
CAGACAAGTATCAGGCCATACTGGAGATGTTATTATTCAAACACAGATGCAGTCATCTATGTCGTTGACA
GTTGTGACCGAGATCGAATTGGCATTTCCAAGTCTGAGTTAGTTGCCATGTTGGAGGAAGAAGAGCTGAG
AAAAGCCATTTTAGTGGTGTTTGCAAATAAGCAGGACATGGAACAGGCCATGACACCCTCAGAAATGGCA
AATGCTCTTGGGTTACCTGCCCTGAAGGACCGGAAGTGGCAGATCTTTAAAACTTCAGCAACCAAAGGCA
CTGGCCTTGATGAGGCAATGGAATGGTTAGTTGAAACCCTGAAAAGCAGACAGTGA

Translation (181 aa):
MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGG
QTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMA
NALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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