CCDS Report for Consensus CDS

PubMed

Entrez

Gene

BLAST

OMIM

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Genome Displays

	Ensembl
	NCBI
	UCSC
	VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48642.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
48642.1	Public	Mus musculus	10	Zfr2	23	108	98

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48642.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000117798.7	ENSMUSP00000113913.1	Accepted	alive
		NCBI	NM_001034895.3	NP_001030067.2	Accepted	alive

Chromosomal Locations for CCDS 48642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)

Genome Browser links:

Chromosome	Start	Stop
10	81233190	81233242
10	81237357	81237591
10	81239430	81239514
10	81239934	81240214
10	81241995	81242174
10	81242770	81242956
10	81243650	81243795
10	81244661	81244780
10	81245405	81245544
10	81246029	81246161
10	81246590	81246756
10	81247219	81247393
10	81248390	81248528
10	81248984	81249078
10	81249165	81249260
10	81249685	81249796
10	81250637	81250734
10	81251252	81251434

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2625 nt):
ATGGCGGCTAGCAGCTCTTCCGGCCTCGCGCAGGGCACCAACCCGTCGTCCAGCACCCAGTCGTCCTCCG CTTTCCCCCTCCCAGCTACTGGGGCCAGCTACACTGTGCAGTTTACCCCCAAAATGGAGAGCACCGCCAG CCTGGCCCTGGCCCCCGCGAGCCAGCTGCCTGCGCCTGGAGGAGGAGTTGCGGTGGGGTATAGCTGCTCC CAGCCCCAAGCCAGCCAGGGCCCCACATCCAGCAGCCAGCCCCGGGGTCCTGTGCCTACCTCTGCATCCG CCCACCAGGAGGATGGTCACAGCTACCGAGAGAAGGTGACCAAGAGCCGCACAGACTCACGGGAGCGGCC AGCCAGGTCGCTCTGCAGGCCAGGACCAAGCTCCCGCAGCCCTGACTCGGACTCAGTGTCACCCGGCCCG CAGCGTCCTCCGCCCTCCTCCCAGCGGGCCCCGCAGAAGCTGCAGGCACCGTCCCCGCCGCCGGCTCCCG TGGGCTCGGACCCGTGGGGTGGCCCTGTCCTCGGGCCCTGGGACCCCACCTTTACCAGCGATGCGCTGCC GTTCCTGGACAGGCTGCCGAAGCCCAAGGCGGGCCCCAGGCCGCCCTCTATGCACTATTGCGAGGTCTGC AGGGTCAGCTGCGCGGGGCCGCAGACCTATCGGGATCACCTGGAAGGGCAGAAGCACCGGAAGAAGCAGG CGGCTCAGAGGACCAGCACACAGCCCAGTGGAGGTCCCAGAGGATCCCAGAGCCTCCACTGTGGCCTGTG CGCCGTGTCCTGCACGGGGGCTGACGCCTATGCTGCGCACATGAGGGGAGCCAGGCACCAGAAGGTCTTC AAGTTGCACACCAGGCTAGGGAAGCCCATTCCCTCTGAGCCCACACCACGGAGTGTCACCTACACCCGAG GTTCGGACAGCACCCCCGAGACCTCAGTCAAGCATGAAGCTCATGCCCGTCACAGCTCACACACCCAAGG CCGGCCAGCACCAGCCAAGGGATCAGCAGCCTCACGCAAGGGGCCACCTGAGCTGCAGACAATGCATGGC CGACCTGGAGACAGGCGGCCATCACACTTCAAGGTGGAGGCCACCAGGGGAGGCCCTGGGGAAGCTTCGG GGAGCTCTGGAGACATGGCGCCAGTGGGCACAGAGTATGTTGAGGAGGTGTGTAGTGATGAGGGGAAGGT GATCCGCTTCCGATGCAAGCTCTGCGAATGCAGCTTCAATGACCGGAACGCCAGAGACATGCACCTGACT GGACGCCGGCACCGTCTGCAGTACAGAAAGAAAGTGGATCCTACACTTCCAGTAGCTGCCCGGCCCAGCG GCCCCATTCAGAGGGTGCTGGCCAAGAGGCTACAGAGGCACTGGCAGCAGGTACAGACACAGCTGGAGGA TACACGGCGCTGGGACTCTGAGCTAAGGCAGCAAGAAGAACACAGCAGGCAGCCTGAGGAGACTCCACAG CCCCAGGTTGAGGAGCAGCTACCAGGGCTTCCTGCATGGGCATTGCCAGCTCCCACCACCAGACCAGGGA TGGCCACTGCACGGCGCCAGTCAGGGCGTCGGCCGGAGAGCAGCGACGACCGTCATGTCATGTGTAAGCA TGCCTCCATCTACCCCACGGAAGAAGAGCTGCAGGCCATCCAGACAGCTGTGTCCCACACAGAACGAGCA CTCAGACTGGTGTCAGACACCCTGGCGGAAGAGAGCAGCCAGCACGGCACCCTGGCGTCCCCACCACCGA GGATGCTGAAGGGTGTGGTGCGGGTTGGCATTCTGGCCAAGGGCCTTGTCCTCCGTGGGGACCACAGTGT ACAGCTGACCCTGCTCTGCTCCAAGAAGCCCACGCACTCCCTGCTGCAGAGGATCAAGCAGGAGCTGCCC CGAGAGCTGTCTATAGTGGCAGAAGACAAGTACGAGGTCTCATCTGACCATGACGCCAACATTGTTATCT CAGCCTGTGTGGAGCCTGGGGTGAAGGTCACCGTGTCTGCCACCTCACCTCTGATGCGGGAAGATCCCTC TGTAAAACAAGGACAGCAAGACGCTCTGTCCGACCCAGAGGACGTCTTAGACCGGGAGAGGTGCCTTGAG ACCCTGGCAGCCCTCCGCCATGCTAAGTGGTTCCAGGCTCGAGCCAGCGGCCTGCAGCCGTGCGTGATTG TCATCAGGGTTCTGAGGGAGCTGTGCCGCTGCCTGCCTCCCTGGGGGGCCCTGCCTGCCTGGGCCATGGA ACTGCTGGTGGAGAAAGTTCTGAGCTCTGCACCCCGGCCCCTGAGCCCAGGGGATGCCATGCGTCGGGTC CTGGAGTATGTGGCCACAGGTGCGCTCCTGACAGATGGCCCGGGGCTACAGGACCCTTGTGAGAAAGGTC CACAGGACGCCCTGGAGCCCATGACCCCACAGCAGCGAGAAGACCTGACGGCCAGTGCGCAGCGTGCCCT GCGTCTTGTGGCCTTCCGGCAGATACACAAGGTCCTTCACATGGAACAGTTACCTCCACGGACCAGATTC GGGGCCGGGGCCCGGGCCCGGAAGAGGATGAGGGAGGCTAGTCAGGCCCAGGAGGGCACCAGGGAGAGGA AGCGGGGCCGACAGGGCACAGCAGGGCTGCCTTGA
Translation (874 aa):
MAASSSSGLAQGTNPSSSTQSSSAFPLPATGASYTVQFTPKMESTASLALAPASQLPAPGGGVAVGYSCS QPQASQGPTSSSQPRGPVPTSASAHQEDGHSYREKVTKSRTDSRERPARSLCRPGPSSRSPDSDSVSPGP QRPPPSSQRAPQKLQAPSPPPAPVGSDPWGGPVLGPWDPTFTSDALPFLDRLPKPKAGPRPPSMHYCEVC RVSCAGPQTYRDHLEGQKHRKKQAAQRTSTQPSGGPRGSQSLHCGLCAVSCTGADAYAAHMRGARHQKVF KLHTRLGKPIPSEPTPRSVTYTRGSDSTPETSVKHEAHARHSSHTQGRPAPAKGSAASRKGPPELQTMHG RPGDRRPSHFKVEATRGGPGEASGSSGDMAPVGTEYVEEVCSDEGKVIRFRCKLCECSFNDRNARDMHLT GRRHRLQYRKKVDPTLPVAARPSGPIQRVLAKRLQRHWQQVQTQLEDTRRWDSELRQQEEHSRQPEETPQ PQVEEQLPGLPAWALPAPTTRPGMATARRQSGRRPESSDDRHVMCKHASIYPTEEELQAIQTAVSHTERA LRLVSDTLAEESSQHGTLASPPPRMLKGVVRVGILAKGLVLRGDHSVQLTLLCSKKPTHSLLQRIKQELP RELSIVAEDKYEVSSDHDANIVISACVEPGVKVTVSATSPLMREDPSVKQGQQDALSDPEDVLDRERCLE TLAALRHAKWFQARASGLQPCVIVIRVLRELCRCLPPWGALPAWAMELLVEKVLSSAPRPLSPGDAMRRV LEYVATGALLTDGPGLQDPCEKGPQDALEPMTPQQREDLTASAQRALRLVAFRQIHKVLHMEQLPPRTRF GAGARARKRMREASQAQEGTRERKRGRQGTAGLP

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH