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Report for CCDS24251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24251.1 Public Mus musculus 10 Rdh9 23 108 98 CCDS HistoryNCBI Gene:103142Re-query CCDS DB by CCDS ID:24251.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24251.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052652.6 ENSMUSP00000057732.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052652.6Link to Ensembl Protein Viewer:ENSMUSP00000057732.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052652Re-query CCDS DB by Protein ID:ENSMUSP00000057732
Original member Current member NCBI NM_153133.2 NP_694773.1 Accepted alive Link to Nucleotide Sequence:NM_153133.2Link to Protein Sequence:NP_694773.1Re-query CCDS DB by Nucleotide ID:NM_153133Re-query CCDS DB by Protein ID:NP_694773Link to BLAST:NP_694773.1

Chromosomal Locations for CCDS 24251.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127776485 127776797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127788608 127788866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127790189 127790352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127790816 127791033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGTGGCTCTTTCTAGTGGCACTGGTGGGCCTTTGGACTCTCCTGTGCTTCTTCAGGGAGAGGCAGGTGG
TGAGCTATCTCCAAGACAAGTATGTCTTCATCACGGGCTGTGACTCTGGCTTTGGGAACCTGCTGGCCAG
ACAGCTGGACAGGAGAGGCATGAGAGTGTTGGCTGCATGTCTGACGGAGAAGGGAGCCGAGGAGCTGAGG
AACAAGACATCTGACAGGCTGGAGACAGTGATCCTGGATGTCACCAAGACAGAGAGTATTGTGACAGCCA
CTCAGTGGGTGAAGGAGCGTGTTGGGAACAGAGGACTCTGGGGCCTGGTCAACAACGCTGGCATCTCCAT
CCCCTCGGGTCCCAACGAGTGGATGAAGAAACAGGACTTTGCACATGTACTGGATGTGAACCTGTTGGGC
TTGATCGAGGTGACTCTGAGCATGCTGCCCTTAGTGAGGAAGGCAAGGGGTCGTGTGATCAACGTCGCCA
GTGTCTTGGGCCGAGTATCTTTGTGTGGTGGTGCTTACTGCATCTCTAAGTATGGTGTAGAGGCCTTCTC
AGACTCCCTCAGGAGGGAGCTCTCCTACTTTGGGGTGAAGGTGGCTATTATAGAGCCTGGCTTCTTCCTG
ACCGGTGTGACCAGTAGTGCCAGATTATGCTCAAATACCCAGATGCTGTGGGACCAGACCAGCTCAGAAA
TCAGGGAGATCTATGGCGAGAAGTACCTGGCATCCTATCTGAAAAGGCTAAACGAATTGGACAAGAGGTG
CAACAAGGACCTGTCTTTGGTGACTGACTGCATGGAGCATGCTCTGACTGCCTGTCACCCTCGTACCCGA
TACTCAGCTGGCTGGGATGCTAAGCTCTTCTACCTCCCCTTGAGCTACCTGCCTACCTTTCTTGTGGATG
CCCTTCTCTATTGGACTTCCCTGAAGCCTGAGAAAGCCCTCTGA

Translation (317 aa):
MWLFLVALVGLWTLLCFFRERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKGAEELR
NKTSDRLETVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSGPNEWMKKQDFAHVLDVNLLG
LIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGFFL
TGVTSSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNELDKRCNKDLSLVTDCMEHALTACHPRTR
YSAGWDAKLFYLPLSYLPTFLVDALLYWTSLKPEKAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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