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Report for CCDS23175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23175.1 Public Mus musculus 9 Alg9 23 108 98 CCDS HistoryNCBI Gene:102580Re-query CCDS DB by CCDS ID:23175.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034561.10 ENSMUSP00000034561.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034561.10Link to Ensembl Protein Viewer:ENSMUSP00000034561.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034561Re-query CCDS DB by Protein ID:ENSMUSP00000034561
Original member NCBI NM_133981.2 NP_598742.1 Updated not alive Link to Nucleotide Sequence:NM_133981.2Link to Protein Sequence:NP_598742.1Re-query CCDS DB by Nucleotide ID:NM_133981Re-query CCDS DB by Protein ID:NP_598742
Current member NCBI NM_133981.3 NP_598742.1 Accepted alive Link to Nucleotide Sequence:NM_133981.3Link to Protein Sequence:NP_598742.1Re-query CCDS DB by Nucleotide ID:NM_133981Re-query CCDS DB by Protein ID:NP_598742Link to BLAST:NP_598742.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598742.1 611 Q8VDI9 611 100% 0 0

Chromosomal Locations for CCDS 23175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 50775385 50775518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50776544 50776679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50778970 50779104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50783258 50783328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50788153 50788241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50789497 50789632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50792063 50792150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50792302 50792407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50800119 50800241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50801938 50802092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50805302 50805431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50806222 50806369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50808677 50808806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50822585 50822715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50842734 50842857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGGCGAGCCGAAGGGCCCGGCAGCGCCTCAAGGGTGGCGGCGGCGGTGGCGGCGGCGGTGGGGATGCGG
GCCCGGCGGCGGAGAAGCTGGAACAGCTCGGCAGCCGGGAGGCAGGCGCAGAGCCGCGGCCAGAGTCTGG
AAATAAAGCAGGGCAAGTCTGGGCCCCTGAAGGATCCACTGCTTTCAAGTGTCTGCTCTCAGCGAGGTTG
TGCGCAGCCCTTCTGAGCAACATCTCGGACTGTGATGAAACATTCAACTACTGGGAACCAACACACTACC
TCATCTACGGGAAGGGATTCCAGACATGGGAATATTCCCCCGTGTATGCCATCCGCTCATATGCTTACCT
GCTGCTGCACGCCTGGCCAGCTGCATTTCATGCACGGATTCTGCAGACTAACAAGATTCTTGTATTCTAC
TTTTTGAGATGTCTCCTGGCTTTTGTGAGCTGTGTTTGTGAACTTTACTTTTATAAGGCTGTGTGCAAGA
AGTTTGGGCTGCATGTGAGTCGAATGATGCTGGCCTTCCTGGTGCTCAGCACGGGCATGTTCTGCTCATC
ATCTGCATTCCTCCCCAGCAGCTTCTGCATGTACACCACGCTGATCGCCATGACGGGATGGTATATGGAC
AAGACACCCATTGCTGTGCTGGGAGTAGCAGCTGGTGCCATCTTAGGGTGGCCGTTTAGTGCAGCTCTTG
GTTTACCCATCGCCTTCGACTTGCTGGCCAGGAAGCACAGGTGGAAGAGTTTTCTCCTCTGGTCCCTGGT
GGCCCTGGCTCTCTTCTTGGTGCCCGTGGTGGTCATTGACAGCTACTATTACGGGAAGTTGGTGGTTGCC
CCTCTCAACATTGTTTTGTATAACGTCTTTACGTCTCATGGACCTGATCTTTATGGTACAGAACCATGGT
ATTTCTATTTAATCAATGGATTTCTGAACTTCAATGTTGCCTTTGCTTTGGCTCTTCTGGTTTTGCCACT
GACTTTCCTTATGGAGTACCTGCTGCAGAGGTTCCATGTTCAGAATTTAGGACACCCGTATTGGCTGACC
TTGGCGCCAATGTATATTTGGTTTATAATTTTCTTCATCCAGCCTCATAAAGAAGAGCGCTTTCTCTTCC
CAGTCTATCCGCTCATATGCCTCTGTGGTGCTGTTGCTCTTTCTGCACTTCAGAAATGCTACCACTTTGT
GTTTCAACGATACCGCCTGGAGCATTACACGGTGACGTCCAACTGGCTGGCGCTGGGCACAGTTTTCCTG
TTTGGGCTCTTGTCGTTCTCCCGCTCTGTGGCTCTGTTCAGAGGATACCACGGGCCCCTTGATTTATATC
CAGAATTTTACAGAATTGCCACAGACCCAACCATCCACACTGTCCCAGAAGGCAGGCCCGTGAACGTCTG
TGTGGGAAAAGAGTGGTATCGATTTCCCAGTAGCTTCCTTCTGCCTGACAATTGGCAGCTTCAGTTCATT
CCATCAGAGTTCAGAGGTCAGCTACCAAAGCCTTTCGCAGAGGGACCACTGGCCACCAGGACTGTTCCCA
CTCACATGAACGACCAGAACCGAGAGGAGCCTTCCAGATACATTGACATCAGCAAATGCCATTACTTAGT
GGATTTGGATACCATGAGAGAAACACCTCGGGAGCCAAACTACTCATCCCACAGAGAAGAGTGGGTCAGC
CTGGCTCACAGACCATTCCTGGATGCGTCTAGGTCTTCCAAGTTGCTTCGGGCATTCTATGTTCCCTTCC
TGTCAGATCAGTACACGGTGTATGTGAACTACACCATCCTGAAGCCTCGGAAAGCAAAGCCGAGCAGGAA
GAAAAGTGGAGGTTAG

Translation (611 aa):
MASRRARQRLKGGGGGGGGGGDAGPAAEKLEQLGSREAGAEPRPESGNKAGQVWAPEGSTAFKCLLSARL
CAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPVYAIRSYAYLLLHAWPAAFHARILQTNKILVFY
FLRCLLAFVSCVCELYFYKAVCKKFGLHVSRMMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMD
KTPIAVLGVAAGAILGWPFSAALGLPIAFDLLARKHRWKSFLLWSLVALALFLVPVVVIDSYYYGKLVVA
PLNIVLYNVFTSHGPDLYGTEPWYFYLINGFLNFNVAFALALLVLPLTFLMEYLLQRFHVQNLGHPYWLT
LAPMYIWFIIFFIQPHKEERFLFPVYPLICLCGAVALSALQKCYHFVFQRYRLEHYTVTSNWLALGTVFL
FGLLSFSRSVALFRGYHGPLDLYPEFYRIATDPTIHTVPEGRPVNVCVGKEWYRFPSSFLLPDNWQLQFI
PSEFRGQLPKPFAEGPLATRTVPTHMNDQNREEPSRYIDISKCHYLVDLDTMRETPREPNYSSHREEWVS
LAHRPFLDASRSSKLLRAFYVPFLSDQYTVYVNYTILKPRKAKPSRKKSGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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