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Report for CCDS9369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9369.1 Public Homo sapiens 13 LHFPL6 24 110 108 CCDS HistoryNCBI Gene:10186Re-query CCDS DB by CCDS ID:9369.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9369.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379589.4 ENSP00000368908.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379589.4Link to Ensembl Protein Viewer:ENSP00000368908.3Re-query CCDS DB by Nucleotide ID:ENST00000379589Re-query CCDS DB by Protein ID:ENSP00000368908
Original member Current member EBI ENST00000648377.1 ENSP00000496801.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648377.1Link to Ensembl Protein Viewer:ENSP00000496801.1Re-query CCDS DB by Nucleotide ID:ENST00000648377Re-query CCDS DB by Protein ID:ENSP00000496801
Original member Current member NCBI NM_005780.3 NP_005771.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005780.3Link to Protein Sequence:NP_005771.1Re-query CCDS DB by Nucleotide ID:NM_005780Re-query CCDS DB by Protein ID:NP_005771Link to BLAST:NP_005771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005771.1 200 Q9Y693 200 100% 0 0

Chromosomal Locations for CCDS 9369.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 39343936 39344054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39378428 39378526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39600832 39601216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGCATCCAGCCTGACTTGTACTGGAGTAATCTGGGCTTTGCTGTCTTTTCTTTGTGCTGCCACCTCCT
GCGTGGGGTTCTTTATGCCTTACTGGCTCTGGGGATCACAGCTGGGCAAGCCTGTGTCCTTCGGTACCTT
CCGGAGGTGCTCATATCCTGTGCATGATGAGAGTCGGCAGATGATGGTGATGGTGGAGGAATGTGGGCGC
TATGCCTCCTTCCAGGGCATCCCCAGCGCAGAATGGAGGATCTGCACCATAGTGACCGGCCTGGGTTGTG
GCCTCCTCCTCCTGGTGGCGCTCACTGCCCTCATGGGTTGCTGTGTTTCCGACCTCATCTCCAGGACAGT
GGGAAGAGTGGCTGGAGGAATTCAGTTTCTTGGGGGCTTGTTGATTGGTGCTGGCTGTGCCCTCTACCCC
TTGGGCTGGGACAGTGAGGAAGTCCGGCAGACTTGTGGCTACACTTCTGGCCAGTTTGACCTGGGGAAGT
GTGAAATCGGCTGGGCCTACTACTGCACGGGAGCAGGTGCCACTGCCGCCATGCTGCTGTGCACGTGGCT
GGCTTGCTTTTCGGGCAAGAAACAGAAGCACTACCCATACTGA

Translation (200 aa):
MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQMMVMVEECGR
YASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGCCVSDLISRTVGRVAGGIQFLGGLLIGAGCALYP
LGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAAMLLCTWLACFSGKKQKHYPY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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