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Report for CCDS21214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21214.1 Public Mus musculus 7 Vrk3 23 108 98 CCDS HistoryNCBI Gene:101568Re-query CCDS DB by CCDS ID:21214.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21214.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002275.14 ENSMUSP00000002275.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002275.14Link to Ensembl Protein Viewer:ENSMUSP00000002275.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002275Re-query CCDS DB by Protein ID:ENSMUSP00000002275
Original member NCBI NM_133945.1 NP_598706.1 Updated not alive Link to Nucleotide Sequence:NM_133945.1Link to Protein Sequence:NP_598706.1Re-query CCDS DB by Nucleotide ID:NM_133945Re-query CCDS DB by Protein ID:NP_598706
Current member NCBI NM_133945.2 NP_598706.1 Accepted alive Link to Nucleotide Sequence:NM_133945.2Link to Protein Sequence:NP_598706.1Re-query CCDS DB by Nucleotide ID:NM_133945Re-query CCDS DB by Protein ID:NP_598706Link to BLAST:NP_598706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598706.1 453 Q8K3G5 453 100% 0 0

Chromosomal Locations for CCDS 21214.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44753817 44753955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44757746 44757895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44759700 44759894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44760878 44760942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44762991 44763057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44764125 44764209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44764783 44764888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44767122 44767214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44768443 44768575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44769533 44769653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44770864 44770922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44775376 44775524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGATCTCCTTCTGTCCAGTCTGTGGCAAAAGTGTCAAGGTATCATTCAAGTTCTGCCCTTACTGTGGCA
AGGCCCTGCCTGTAGAGGAGGATGGAGGCACCCAGTCTGCCGTGACGCCTCATGTGTCATCCGTTCCAGG
CTCCAGGAGAGACCTGAACTCCAGTTTTGAAACCTCTCCCAAGAAAGTGAAATGCTCACACACTGTCACT
TCTCTCCCACTCTCCCGCCACTCTGACTGTGACAGTTCTGGGTCAGACAACACCTTGACTTCTCCTGACA
GGGCCACAGGCACCCGGAGCAGACCCCTGACCCCCAAAGGCAGCCCACTTTCCAACAGGCAGAGCCCTCA
GACTCTGAAGCGGACCCGGGTGACCACCTCACTCCAGGCTCTAGCCACAGGAACAGAGCTGACAGACCAG
AATGGGAAACACTGGACCCTGGGGGCCCTGCAGATCCGGGATGACCAAGGCATTCTCTATGAAGCTGAGC
CTACTTCTGCCGTCCCCTCTGAATCAAGGACCCAGAAGTGGAGATTCTCACTCAAACTGGACTCCAAGGA
TGGGCGCCTTTTCAATGAGCAGAACTTCTTTCAGAGAGTAGCCAAGCCTCTGCAAGTGAACAAATGGAAG
AAGCAGTTCTTGCTCCCGCTCCTGGCCATCCCCACCTGTATCGGCTTTGGCATTCACCAGGACAAGTACA
GGTTCCTAGTATTCCCCAGCCTGGGGAGGAGCCTTCAGTCAGCCCTGGATGACAACCCAAAGCATGTGGT
ATCAGAGAGATGTGTGCTTCAGGTGGCCTGCAGGCTGCTGGATGCTCTGGAGTATCTCCATGAAAATGAG
TATGTTCACGGGAACCTGACAGCTGAGAATGTCTTTGTGAATCCAGAGGATCTGAGCCAGGTGACCCTGG
TGGGCTATGGCTTCACCTACCGATACTGCCCAGGTGGCAAACACGTGGCCTACAAAGAAGGCAGCAGGAG
TCCACACGATGGGGACTTGGAGTTCATTAGCATGGACCTGCACAAGGGATGCGGACCCTCCCGCCGCAGC
GATCTCCAGACCTTGGGCTACTGTATGCTCAAGTGGCTTTATGGGTCCCTGCCATGGACAAATTGCCTTC
CCAACACCGAAAAGATAACTAGGCAGAAGCAGAAGTATCTGGACAGCCCCGAGCGCCTCGTGGGACTGTG
TGGCCGCTGGAACAAGGCCTCAGAGACCCTGCGGGAGTACCTGAAGGTGGTGATGGCCCTCAATTATGAG
GAGAAGCCACCCTATGCCACGCTGAGGAACAGCCTAGAAGCTCTGCTGCAGGATATGCGGGTGTCACCCT
ATGACCCTCTGGACCTCCAGATGGTGCCTTAG

Translation (453 aa):
MISFCPVCGKSVKVSFKFCPYCGKALPVEEDGGTQSAVTPHVSSVPGSRRDLNSSFETSPKKVKCSHTVT
SLPLSRHSDCDSSGSDNTLTSPDRATGTRSRPLTPKGSPLSNRQSPQTLKRTRVTTSLQALATGTELTDQ
NGKHWTLGALQIRDDQGILYEAEPTSAVPSESRTQKWRFSLKLDSKDGRLFNEQNFFQRVAKPLQVNKWK
KQFLLPLLAIPTCIGFGIHQDKYRFLVFPSLGRSLQSALDDNPKHVVSERCVLQVACRLLDALEYLHENE
YVHGNLTAENVFVNPEDLSQVTLVGYGFTYRYCPGGKHVAYKEGSRSPHDGDLEFISMDLHKGCGPSRRS
DLQTLGYCMLKWLYGSLPWTNCLPNTEKITRQKQKYLDSPERLVGLCGRWNKASETLREYLKVVMALNYE
EKPPYATLRNSLEALLQDMRVSPYDPLDLQMVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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