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Report for CCDS11576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11576.1 Public Homo sapiens 17 TOB1 24 110 108 CCDS HistoryNCBI Gene:10140Re-query CCDS DB by CCDS ID:11576.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11576.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268957.3 ENSP00000268957.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000268957.3Link to Ensembl Protein Viewer:ENSP00000268957.3Re-query CCDS DB by Nucleotide ID:ENST00000268957Re-query CCDS DB by Protein ID:ENSP00000268957
Original member Current member EBI ENST00000499247.3 ENSP00000427695.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000499247.3Link to Ensembl Protein Viewer:ENSP00000427695.1Re-query CCDS DB by Nucleotide ID:ENST00000499247Re-query CCDS DB by Protein ID:ENSP00000427695
Original member Current member NCBI NM_001243877.2 NP_001230806.1 Accepted alive Link to Nucleotide Sequence:NM_001243877.2Link to Protein Sequence:NP_001230806.1Re-query CCDS DB by Nucleotide ID:NM_001243877Re-query CCDS DB by Protein ID:NP_001230806Link to BLAST:NP_001230806.1
Original member Current member NCBI NM_005749.4 NP_005740.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005749.4Link to Protein Sequence:NP_005740.1Re-query CCDS DB by Nucleotide ID:NM_005749Re-query CCDS DB by Protein ID:NP_005740Link to BLAST:NP_005740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230806.1 345 P50616 345 100% 0 0
NP_005740.1 345 P50616 345 100% 0 0

Chromosomal Locations for CCDS 11576.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 50862980 50864017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGCAGCTTGAAATCCAAGTAGCACTAAATTTTATTATTTCGTATTTGTACAATAAGCTTCCCAGGAGAC
GTGTCAACATTTTTGGTGAAGAACTTGAAAGACTTCTTAAGAAGAAATATGAAGGGCACTGGTATCCTGA
AAAGCCATACAAAGGATCGGGGTTTAGATGTATACACATAGGGGAGAAAGTGGACCCAGTGATTGAACAA
GCATCCAAAGAGAGTGGTTTGGACATTGATGATGTTCGTGGCAATCTGCCACAGGATCTTAGTGTTTGGA
TCGACCCATTTGAGGTTTCTTACCAAATTGGTGAAAAGGGACCAGTGAAGGTGCTTTACGTGGATGATAA
TAATGAAAATGGATGTGAGTTGGATAAGGAGATCAAAAACAGCTTTAACCCAGAGGCCCAGGTTTTTATG
CCCATAAGTGACCCAGCCTCATCAGTGTCCAGCTCTCCATCGCCTCCTTTTGGTCACTCTGCTGCTGTAA
GCCCTACCTTCATGCCCCGGTCCACTCAGCCTTTAACCTTTACCACTGCCACTTTTGCTGCCACCAAGTT
CGGCTCTACCAAAATGAAGAATAGTGGCCGTAGCAACAAGGTTGCACGTACTTCTCCCATCAACCTCGGC
TTGAATGTGAATGACCTCTTGAAGCAGAAAGCCATCTCTTCCTCAATGCACTCTCTGTATGGGCTTGGCT
TGGGTAGCCAGCAGCAGCCACAGCAACAGCAGCAGCCAGCCCAGCCGCCACCGCCACCACCACCACCACA
GCAGCAACAACAGCAGAAAACCTCTGCTCTTTCTCCTAATGCCAAGGAATTTATTTTTCCTAATATGCAG
GGTCAAGGTAGTAGTACCAATGGAATGTTCCCAGGTGACAGCCCCCTTAACCTCAGTCCTCTCCAGTACA
GTAATGCCTTTGATGTGTTTGCAGCCTATGGAGGCCTCAATGAGAAATCTTTTGTAGATGGCTTGAATTT
TAGCTTAAATAACATGCAGTATTCTAACCAGCAATTCCAGCCTGTTATGGCTAACTAA

Translation (345 aa):
MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIGEKVDPVIEQ
ASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVDDNNENGCELDKEIKNSFNPEAQVFM
PISDPASSVSSSPSPPFGHSAAVSPTFMPRSTQPLTFTTATFAATKFGSTKMKNSGRSNKVARTSPINLG
LNVNDLLKQKAISSSMHSLYGLGLGSQQQPQQQQQPAQPPPPPPPPQQQQQQKTSALSPNAKEFIFPNMQ
GQGSSTNGMFPGDSPLNLSPLQYSNAFDVFAAYGGLNEKSFVDGLNFSLNNMQYSNQQFQPVMAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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